Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CC204_RS00445 Genome accession   NZ_CP021874
Coordinates   93367..95181 (+) Length   604 a.a.
NCBI ID   WP_088268289.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 88367..100181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS00425 trpS 89383..90393 (-) 1011 WP_088268285.1 tryptophan--tRNA ligase -
  CC204_RS00430 spxA 90757..91155 (+) 399 WP_010760718.1 transcriptional regulator SpxA -
  CC204_RS00435 - 91392..92042 (+) 651 WP_088268287.1 adaptor protein MecA -
  CC204_RS00440 - 92132..93331 (+) 1200 WP_227011207.1 competence protein CoiA -
  CC204_RS00445 pepF 93367..95181 (+) 1815 WP_088268289.1 oligoendopeptidase F Regulator
  CC204_RS00450 - 95226..95876 (-) 651 WP_088268291.1 ClpXP adapter SpxH family protein -
  CC204_RS00455 - 95986..96579 (-) 594 WP_088268293.1 CYTH domain-containing protein -
  CC204_RS00460 - 96775..97452 (+) 678 WP_087639613.1 GTP pyrophosphokinase -
  CC204_RS00465 - 97463..98260 (+) 798 WP_088268295.1 NAD kinase -
  CC204_RS00470 - 98267..99160 (+) 894 WP_088268297.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69540.19 Da        Isoelectric Point: 4.7176

>NTDB_id=234309 CC204_RS00445 WP_088268289.1 93367..95181(+) (pepF) [Enterococcus wangshanyuanii strain MN05]
MSGAKQLPERSTLPIEMTWDLTKVFKDDQAFDDAYQVLTKELQEVEKYKGTLDQGSTAFFNSIEMLLNVYRQIEVIYVYA
HLKNDQDTANATYQALYARASSLFAQVSEAVAWFEPELLSLNDDLIWGYFAEKPELEIYRHFVENILNERPHILSAEQEA
LLAGASEIFGASSDTFSILNNADLKFPVIEDENGEKIQLTHGVYGQLMENIDRDVREKAFKALYSVYDQFQNTFAQTLSS
HVKAHNYKAKVRNYPSARAAALSSNHIPESVYDTLLDVVNKHLPLLHRYVALRKRLLNLEELHMYDMYTPILGEASIKYS
YEEAKEKALTALKPMGEEYLTVVKTAFNDRWIDVIENQGKRSGAYSSGAYDTAPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRNNQPYVYGDYSIFLAEIASTTNENILTEHLLETETDPRIRAYVLNHYLDGFKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSEYLSEYYEQLNAKFYGPDVVKDPEIMLEWTRIPHFYYNYYVYQYATGFSAASALANKILGEEPRALENYLTYLKSG
SSDYPIEVMKKAGVDMTKPQYIEDAMKVFEARLNELEKLVESIG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=234309 CC204_RS00445 WP_088268289.1 93367..95181(+) (pepF) [Enterococcus wangshanyuanii strain MN05]
ATGAGCGGAGCAAAACAATTACCAGAACGTTCCACATTGCCTATTGAAATGACTTGGGATCTAACTAAAGTTTTTAAAGA
CGATCAGGCATTTGACGATGCTTACCAAGTGTTGACGAAAGAATTACAAGAAGTAGAAAAATATAAAGGGACGCTGGATC
AGGGCAGTACAGCTTTTTTTAATAGTATTGAGATGCTGCTCAACGTATATCGTCAAATCGAAGTAATCTATGTGTATGCT
CATTTAAAAAATGATCAAGATACAGCGAATGCGACATATCAAGCATTATATGCTAGAGCAAGCTCATTGTTTGCACAAGT
CAGTGAGGCAGTTGCTTGGTTTGAACCAGAATTATTATCTTTAAATGATGATCTGATTTGGGGCTATTTTGCTGAGAAGC
CAGAATTGGAAATTTATAGGCATTTTGTCGAAAATATACTAAATGAACGTCCTCATATTTTATCTGCAGAGCAAGAAGCA
CTGCTAGCTGGCGCTAGTGAAATTTTTGGCGCGTCAAGTGATACATTTTCAATTTTGAACAATGCAGATTTGAAATTTCC
TGTGATCGAGGATGAAAATGGTGAGAAAATTCAATTGACTCATGGTGTTTATGGCCAGTTGATGGAGAATATCGATAGAG
ATGTTCGTGAAAAGGCATTTAAAGCACTGTATTCAGTGTATGATCAGTTCCAAAATACATTTGCGCAAACGTTAAGTTCT
CATGTCAAAGCGCATAATTATAAAGCCAAGGTTCGAAACTATCCATCGGCTAGAGCAGCAGCATTAAGTAGTAACCATAT
ACCCGAAAGTGTCTACGATACGTTGTTAGATGTCGTGAATAAGCATTTACCGTTGCTTCATCGATATGTTGCATTACGGA
AACGTTTACTGAACTTAGAAGAACTGCATATGTATGATATGTATACGCCGATTTTAGGAGAAGCCTCAATCAAATACTCT
TATGAAGAAGCAAAAGAAAAAGCGCTGACAGCCTTAAAACCAATGGGAGAGGAATATCTTACCGTTGTTAAAACTGCGTT
TAATGATCGTTGGATCGATGTCATTGAAAATCAAGGAAAACGAAGCGGTGCATATTCATCAGGAGCATATGACACAGCAC
CGTATATTTTGATGAATTGGCATGATAGTCTAGATCAACTCTATACATTAGTACATGAGATGGGCCATAGCGTGCACAGC
TATTTTACTCGTAACAATCAACCTTATGTTTATGGGGATTATTCGATTTTCTTAGCTGAGATTGCATCTACCACAAATGA
AAATATTTTAACAGAGCATCTGTTAGAGACAGAAACGGATCCACGTATCAGAGCCTACGTGCTGAATCATTATTTAGATG
GATTTAAAGGAACGATTTTCCGTCAAACACAGTTTGCTGAATTTGAGCATTTTATCCATACAGAAGATGCCAAAGGAACG
CCTTTGACTAGTGAGTATTTAAGTGAATACTATGAGCAATTGAATGCAAAATTCTACGGACCAGATGTTGTAAAAGATCC
AGAAATCATGTTGGAATGGACACGAATTCCACATTTTTACTATAATTACTATGTTTATCAATACGCAACAGGCTTTTCAG
CGGCTTCTGCTTTAGCAAATAAAATTTTGGGCGAAGAACCGCGCGCTCTAGAGAATTATTTGACCTACTTGAAATCAGGA
AGCAGTGATTATCCGATCGAAGTCATGAAAAAGGCTGGTGTGGATATGACTAAACCACAATATATAGAAGATGCAATGAA
GGTTTTTGAAGCGCGTTTGAATGAATTGGAGAAACTTGTAGAATCAATTGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.405

98.013

0.543

Multiple sequence alignment