Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BB162_RS05275 Genome accession   NZ_CP021869
Coordinates   990829..991791 (-) Length   320 a.a.
NCBI ID   WP_088197851.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 985829..996791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB162_RS05255 (BB162_05255) dprA 987030..987872 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  BB162_RS05260 (BB162_05260) - 988010..989038 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  BB162_RS05265 (BB162_05265) - 989100..989861 (-) 762 WP_000614758.1 ABC transporter ATP-binding protein -
  BB162_RS05270 (BB162_05270) - 989858..990832 (-) 975 WP_000588583.1 iron chelate uptake ABC transporter family permease subunit -
  BB162_RS05275 (BB162_05275) ceuB 990829..991791 (-) 963 WP_088197851.1 ABC transporter permease Machinery gene
  BB162_RS05280 (BB162_05280) - 992031..992579 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  BB162_RS05285 (BB162_05285) - 992600..993361 (-) 762 WP_000201092.1 ribonuclease HII -
  BB162_RS05290 (BB162_05290) ylqF 993348..994199 (-) 852 WP_000201280.1 ribosome biogenesis GTPase YlqF -
  BB162_RS05295 (BB162_05295) - 994475..995047 (-) 573 WP_001231797.1 L,D-transpeptidase -
  BB162_RS05300 (BB162_05300) - 995249..996733 (-) 1485 WP_000256021.1 carbon starvation protein A -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34894.02 Da        Isoelectric Point: 8.7207

>NTDB_id=234237 BB162_RS05275 WP_088197851.1 990829..991791(-) (ceuB) [Streptococcus agalactiae strain SG-M6]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLNQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISLTKGDHMSSTILETSLLGTCIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=234237 BB162_RS05275 WP_088197851.1 990829..991791(-) (ceuB) [Streptococcus agalactiae strain SG-M6]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTAATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTAATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATTGCTTCAGGTTTTGCCATTTTAGGATCGCTGCTTTTTGTAACTATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCTTAACTAAAGGGGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGACTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.276

99.688

0.481

Multiple sequence alignment