Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MJ69_RS12730 Genome accession   NZ_CP027442
Coordinates   2215927..2216442 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3252     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2210927..2221442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ69_RS12705 ygaZ 2211326..2212063 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  MJ69_RS12710 ygaH 2212053..2212388 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  MJ69_RS12715 emrR 2212479..2213009 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  MJ69_RS12720 emrA 2213136..2214308 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  MJ69_RS12725 emrB 2214325..2215863 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  MJ69_RS12730 luxS 2215927..2216442 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  MJ69_RS12735 gshA 2216592..2218148 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  MJ69_RS12740 yqaA 2218221..2218649 (-) 429 WP_001287457.1 YqaA family protein -
  MJ69_RS12745 yqaB 2218646..2219212 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  MJ69_RS12775 csrA 2220537..2220722 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=234002 MJ69_RS12730 WP_001130207.1 2215927..2216442(-) (luxS) [Escherichia coli strain 2013C-3252]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=234002 MJ69_RS12730 WP_001130207.1 2215927..2216442(-) (luxS) [Escherichia coli strain 2013C-3252]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment