Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   BB313_RS01315 Genome accession   NZ_CP021865
Coordinates   213854..214825 (+) Length   323 a.a.
NCBI ID   WP_000250805.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M50     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208854..219825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB313_RS01300 (BB313_01295) rpoC 209552..213202 (+) 3651 WP_000228729.1 DNA-directed RNA polymerase subunit beta' -
  BB313_RS01305 (BB313_01300) - 213316..213681 (+) 366 WP_000285373.1 DUF1033 family protein -
  BB313_RS01315 (BB313_01310) comYA 213854..214825 (+) 972 WP_000250805.1 competence type IV pilus ATPase ComGA Machinery gene
  BB313_RS01320 (BB313_01315) comYB 214719..215762 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  BB313_RS01325 (BB313_01320) comGC/cglC 215759..216088 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  BB313_RS01330 (BB313_01325) comYD 216063..216476 (+) 414 WP_000244261.1 competence type IV pilus minor pilin ComGD Machinery gene
  BB313_RS01335 (BB313_01330) comGE 216448..216747 (+) 300 WP_000234804.1 competence type IV pilus minor pilin ComGE -
  BB313_RS01340 (BB313_01335) comGF 216701..217162 (+) 462 WP_001874812.1 competence type IV pilus minor pilin ComGF -
  BB313_RS01345 (BB313_01340) comGG 217140..217511 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  BB313_RS01350 (BB313_01345) comYH 217626..218600 (+) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene
  BB313_RS01355 (BB313_01350) - 218632..219825 (+) 1194 WP_000047534.1 acetate kinase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 36801.32 Da        Isoelectric Point: 6.8469

>NTDB_id=234002 BB313_RS01315 WP_000250805.1 213854..214825(+) (comYA) [Streptococcus agalactiae strain SG-M50]
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGIRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVDILAEEGHISKKQAQVEKIIPQETTESS
PTF

Nucleotide


Download         Length: 972 bp        

>NTDB_id=234002 BB313_RS01315 WP_000250805.1 213854..214825(+) (comYA) [Streptococcus agalactiae strain SG-M50]
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTATAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGATA
TCTTGGCTGAAGAAGGACATATCAGTAAGAAACAGGCACAAGTCGAAAAAATTATCCCTCAAGAAACAACGGAAAGTAGT
CCAACTTTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

68.81

96.285

0.663
  comYA Streptococcus mutans UA140

68.81

96.285

0.663
  comYA Streptococcus gordonii str. Challis substr. CH1

63.636

98.762

0.628
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.701

96.285

0.604
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

61.736

96.285

0.594
  comGA/cglA/cilD Streptococcus pneumoniae D39

61.736

96.285

0.594
  comGA/cglA/cilD Streptococcus pneumoniae R6

61.736

96.285

0.594
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

61.736

96.285

0.594
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.935

95.975

0.594
  comGA Lactococcus lactis subsp. cremoris KW2

50.621

99.69

0.505

Multiple sequence alignment