Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MJ69_RS07925 Genome accession   NZ_CP027442
Coordinates   1317893..1319320 (+) Length   475 a.a.
NCBI ID   WP_000980546.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3252     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1312893..1324320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ69_RS07885 yeeW 1313078..1313272 (+) 195 WP_000988600.1 DUF5983 family protein -
  MJ69_RS32335 - 1313306..1313398 (+) 93 Protein_1472 DUF957 domain-containing protein -
  MJ69_RS07895 - 1313687..1313824 (-) 138 Protein_1473 transposase domain-containing protein -
  MJ69_RS07900 - 1313887..1314069 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MJ69_RS07905 tmaR 1314170..1314499 (-) 330 WP_000450409.1 DUF496 family protein -
  MJ69_RS07910 yeeA 1314671..1315729 (-) 1059 WP_001200892.1 FUSC family protein -
  MJ69_RS07915 sbmC 1315927..1316400 (-) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  MJ69_RS07920 dacD 1316518..1317684 (-) 1167 WP_000830142.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MJ69_RS07925 sbcB 1317893..1319320 (+) 1428 WP_000980546.1 exodeoxyribonuclease I Machinery gene
  MJ69_RS07930 tsuB 1319363..1319590 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MJ69_RS07935 tsuA 1319604..1320662 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  MJ69_RS07940 plaP 1320841..1322199 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  MJ69_RS07945 yoeI 1322189..1322251 (-) 63 WP_010723108.1 membrane protein YoeI -
  MJ69_RS07950 yeeY 1322466..1323395 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MJ69_RS07955 yeeZ 1323441..1324265 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54528.82 Da        Isoelectric Point: 5.3498

>NTDB_id=233992 MJ69_RS07925 WP_000980546.1 1317893..1319320(+) (sbcB) [Escherichia coli strain 2013C-3252]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=233992 MJ69_RS07925 WP_000980546.1 1317893..1319320(+) (sbcB) [Escherichia coli strain 2013C-3252]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment