Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6W65_RS25385 Genome accession   NZ_CP027437
Coordinates   5003124..5004551 (-) Length   475 a.a.
NCBI ID   WP_106906897.1    Uniprot ID   -
Organism   Escherichia coli strain 2012C-4221     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4998124..5009551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W65_RS25350 hisL 4998708..4998758 (-) 51 WP_001364200.1 his operon leader peptide -
  C6W65_RS25355 yefM 4999041..4999292 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  C6W65_RS25360 yoeB 4999289..4999543 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  C6W65_RS25365 yeeZ 4999626..5000450 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C6W65_RS25370 yeeY 5000496..5001425 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6W65_RS25375 yoeI 5001640..5001702 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6W65_RS25380 plaP 5001692..5003050 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6W65_RS25385 sbcB 5003124..5004551 (-) 1428 WP_106906897.1 exodeoxyribonuclease I Machinery gene
  C6W65_RS25390 dacD 5004760..5005926 (+) 1167 WP_106906898.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6W65_RS25395 sbmC 5006045..5006518 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  C6W65_RS25400 yeeA 5006717..5007775 (+) 1059 WP_001200891.1 FUSC family protein -
  C6W65_RS25405 tmaR 5007947..5008276 (+) 330 WP_000450409.1 DUF496 family protein -
  C6W65_RS25410 - 5008377..5008820 (-) 444 WP_001189441.1 EutP/PduV family microcompartment system protein -
  C6W65_RS25415 pduU 5008825..5009175 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54409.75 Da        Isoelectric Point: 5.4700

>NTDB_id=233901 C6W65_RS25385 WP_106906897.1 5003124..5004551(-) (sbcB) [Escherichia coli strain 2012C-4221]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPLMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPELLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=233901 C6W65_RS25385 WP_106906897.1 5003124..5004551(-) (sbcB) [Escherichia coli strain 2012C-4221]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCTGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTATTGCAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583