Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6W65_RS21425 Genome accession   NZ_CP027437
Coordinates   4189644..4190159 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2012C-4221     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4184644..4195159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W65_RS21380 csrA 4185365..4185550 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6W65_RS21410 yqaB 4186874..4187440 (+) 567 WP_106906685.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6W65_RS21415 yqaA 4187437..4187865 (+) 429 WP_001287454.1 YqaA family protein -
  C6W65_RS21420 gshA 4187938..4189494 (+) 1557 WP_106906686.1 glutamate--cysteine ligase -
  C6W65_RS21425 luxS 4189644..4190159 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6W65_RS21430 - 4190210..4191322 (-) 1113 WP_000638152.1 ATP-binding protein -
  C6W65_RS21435 - 4191319..4192026 (-) 708 WP_106906687.1 RNA ligase family protein -
  C6W65_RS21440 emrB 4192284..4193822 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6W65_RS21445 emrA 4193839..4195011 (-) 1173 WP_106906688.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=233891 C6W65_RS21425 WP_001130211.1 4189644..4190159(+) (luxS) [Escherichia coli strain 2012C-4221]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233891 C6W65_RS21425 WP_001130211.1 4189644..4190159(+) (luxS) [Escherichia coli strain 2012C-4221]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTTTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCCCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment