Detailed information NTG0233801

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ND02_RS22700
• Genome accession: NZ_CP027435
• Coordinates: 4271565..4272557 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-3599
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4266565..4277557

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ND02_RS22675	ygbN	4267249..4268613 (+)	1365	WP_000104444.1	GntP family transporter	-
ND02_RS22680	-	4268623..4268859 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ND02_RS22685	-	4268870..4270297 (-)	1428	WP_000863215.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ND02_RS22690	-	4270297..4270890 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ND02_RS22695	-	4271037..4271444 (+)	408	WP_001208060.1	MarR family winged helix-turn-helix transcriptional regulator	-
ND02_RS22700	rpoS	4271565..4272557 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ND02_RS22705	nlpD	4272620..4273714 (-)	1095	WP_306307908.1	murein hydrolase activator NlpD	-
ND02_RS22710	pcm	4273899..4274525 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ND02_RS22715	surE	4274519..4275280 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ND02_RS22720	truD	4275261..4276310 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ND02_RS22725	ispF	4276307..4276786 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ND02_RS22730	ispD	4276786..4277496 (-)	711	WP_000246142.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=233801 ND02_RS22700 WP_000081550.1 4271565..4272557(-) (rpoS) [Escherichia coli strain 2014C-3599]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=233801 ND02_RS22700 WP_000081550.1 4271565..4272557(-) (rpoS) [Escherichia coli strain 2014C-3599]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715