Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ND02_RS22395 Genome accession   NZ_CP027435
Coordinates   4214630..4215145 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2014C-3599     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4209630..4220145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND02_RS22370 ygaZ 4210029..4210766 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  ND02_RS22375 ygaH 4210756..4211091 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  ND02_RS22380 emrR 4211182..4211712 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  ND02_RS22385 emrA 4211839..4213011 (+) 1173 WP_001370257.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  ND02_RS22390 emrB 4213028..4214566 (+) 1539 WP_001370184.1 multidrug efflux MFS transporter permease subunit EmrB -
  ND02_RS22395 luxS 4214630..4215145 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  ND02_RS22400 gshA 4215295..4216851 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  ND02_RS22405 yqaA 4216924..4217352 (-) 429 WP_001287454.1 YqaA family protein -
  ND02_RS22410 yqaB 4217349..4217915 (-) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  ND02_RS22440 csrA 4219373..4219558 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=233798 ND02_RS22395 WP_001130211.1 4214630..4215145(-) (luxS) [Escherichia coli strain 2014C-3599]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233798 ND02_RS22395 WP_001130211.1 4214630..4215145(-) (luxS) [Escherichia coli strain 2014C-3599]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment