Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ND02_RS09915 Genome accession   NZ_CP027435
Coordinates   1960084..1960713 (+) Length   209 a.a.
NCBI ID   WP_000841914.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3599     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955084..1965713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ND02_RS09890 ycbZ 1955474..1957234 (-) 1761 WP_000156526.1 Lon protease family protein -
  ND02_RS09895 matP 1957420..1957872 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ND02_RS09900 ompA 1957947..1958999 (-) 1053 WP_000750419.1 porin OmpA -
  ND02_RS09910 sulA 1959356..1959865 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ND02_RS09915 sxy/tfoX 1960084..1960713 (+) 630 WP_000841914.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ND02_RS09920 yccS 1960676..1962838 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ND02_RS09925 yccF 1962848..1963294 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ND02_RS09930 helD 1963417..1965471 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.97 Da        Isoelectric Point: 9.2180

>NTDB_id=233776 ND02_RS09915 WP_000841914.1 1960084..1960713(+) (sxy/tfoX) [Escherichia coli strain 2014C-3599]
MKSPSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=233776 ND02_RS09915 WP_000841914.1 1960084..1960713(+) (sxy/tfoX) [Escherichia coli strain 2014C-3599]
ATGAAAAGCCCCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995