Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CDH88_RS17255 Genome accession   NZ_CP021840
Coordinates   3464017..3464646 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC974     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3459017..3469646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS17230 (CDH88_17215) ycbZ 3459406..3461166 (-) 1761 WP_021577219.1 Lon protease family protein -
  CDH88_RS17235 (CDH88_17220) matP 3461352..3461804 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CDH88_RS17240 (CDH88_17225) ompA 3461880..3462932 (-) 1053 WP_021577220.1 porin OmpA -
  CDH88_RS17250 (CDH88_17235) sulA 3463289..3463798 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  CDH88_RS17255 (CDH88_17240) sxy/tfoX 3464017..3464646 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CDH88_RS17260 (CDH88_17245) yccS 3464609..3466771 (-) 2163 WP_000323868.1 YccS family putative transporter -
  CDH88_RS17265 (CDH88_17250) yccF 3466781..3467227 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CDH88_RS17270 (CDH88_17255) helD 3467350..3469404 (+) 2055 WP_021577221.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=233744 CDH88_RS17255 WP_000839153.1 3464017..3464646(+) (sxy/tfoX) [Escherichia coli strain EC974]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=233744 CDH88_RS17255 WP_000839153.1 3464017..3464646(+) (sxy/tfoX) [Escherichia coli strain EC974]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment