Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6P57_RS21020 Genome accession   NZ_CP027430
Coordinates   4094762..4096189 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain AS19-RrmA-     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4089762..4101189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P57_RS20990 (C6P57_20990) yeeZ 4089817..4090641 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C6P57_RS20995 (C6P57_20995) yeeY 4090687..4091616 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  C6P57_RS21000 (C6P57_21000) yoeI 4091831..4091893 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6P57_RS21005 (C6P57_21005) plaP 4091883..4093241 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6P57_RS21010 (C6P57_21010) tsuA 4093420..4094478 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  C6P57_RS21015 (C6P57_21015) tsuB 4094492..4094719 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6P57_RS21020 (C6P57_21020) sbcB 4094762..4096189 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  C6P57_RS21025 (C6P57_21025) dacD 4096398..4097564 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6P57_RS21030 (C6P57_21030) sbmC 4097683..4098156 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  C6P57_RS21035 (C6P57_21035) yeeA 4098354..4099412 (+) 1059 WP_001200905.1 FUSC family protein -
  C6P57_RS21040 (C6P57_21040) tmaR 4099584..4099913 (+) 330 WP_000450409.1 DUF496 family protein -
  C6P57_RS21045 (C6P57_21045) - 4100014..4100196 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C6P57_RS21050 (C6P57_21050) - 4100250..4100396 (+) 147 Protein_3859 transposase domain-containing protein -
  C6P57_RS24105 (C6P57_21055) - 4100685..4100765 (-) 81 Protein_3860 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=233736 C6P57_RS21020 WP_000980563.1 4094762..4096189(-) (sbcB) [Escherichia coli strain AS19-RrmA-]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=233736 C6P57_RS21020 WP_000980563.1 4094762..4096189(-) (sbcB) [Escherichia coli strain AS19-RrmA-]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581