Detailed information NTG0233723

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6P57_RS17335
• Genome accession: NZ_CP027430
• Coordinates: 3350005..3350997 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AS19-RrmA-
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3345005..3355997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6P57_RS17305 (C6P57_17305)	ispD	3345066..3345776 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6P57_RS17310 (C6P57_17310)	ispF	3345776..3346255 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6P57_RS17315 (C6P57_17315)	truD	3346252..3347301 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6P57_RS17320 (C6P57_17320)	surE	3347282..3348043 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6P57_RS17325 (C6P57_17325)	pcm	3348037..3348663 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6P57_RS17330 (C6P57_17330)	nlpD	3348848..3349942 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6P57_RS17335 (C6P57_17335)	rpoS	3350005..3350997 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6P57_RS17340 (C6P57_17340)	ygbN	3351091..3352455 (-)	1365	WP_000104459.1	GntP family transporter	-
C6P57_RS17345 (C6P57_17345)	ygbM	3352544..3353320 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
C6P57_RS17350 (C6P57_17350)	ygbL	3353325..3353963 (-)	639	WP_001278994.1	aldolase	-
C6P57_RS17355 (C6P57_17355)	otnK	3353960..3355222 (-)	1263	WP_000590371.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=233723 C6P57_RS17335 WP_000081550.1 3350005..3350997(+) (rpoS) [Escherichia coli strain AS19-RrmA-]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=233723 C6P57_RS17335 WP_000081550.1 3350005..3350997(+) (rpoS) [Escherichia coli strain AS19-RrmA-]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715