Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | CA592_RS09050 | Genome accession | NZ_CP021838 |
| Coordinates | 1679333..1680673 (-) | Length | 446 a.a. |
| NCBI ID | WP_004892696.1 | Uniprot ID | - |
| Organism | Anoxybacillus flavithermus strain 52-1A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1674333..1685673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA592_RS09035 (CA592_09035) | - | 1674597..1674884 (-) | 288 | WP_004892688.1 | EscU/YscU/HrcU family type III secretion system export apparatus switch protein | - |
| CA592_RS09040 (CA592_09040) | - | 1674881..1678738 (-) | 3858 | WP_230456221.1 | metal-dependent peptidase | - |
| CA592_RS09045 (CA592_09045) | - | 1678668..1679336 (-) | 669 | WP_004892693.1 | ComF family protein | - |
| CA592_RS09050 (CA592_09050) | comFA | 1679333..1680673 (-) | 1341 | WP_004892696.1 | DEAD/DEAH box helicase | Machinery gene |
| CA592_RS09055 (CA592_09055) | - | 1680741..1681583 (-) | 843 | WP_004892698.1 | DegV family protein | - |
| CA592_RS09060 (CA592_09060) | - | 1681683..1682363 (-) | 681 | WP_004892701.1 | response regulator | - |
| CA592_RS09065 (CA592_09065) | - | 1682360..1683523 (-) | 1164 | WP_004892704.1 | sensor histidine kinase | - |
| CA592_RS09070 (CA592_09070) | - | 1683719..1684357 (+) | 639 | WP_004892707.1 | YigZ family protein | - |
| CA592_RS09075 (CA592_09075) | - | 1684450..1685469 (+) | 1020 | WP_004892708.1 | LCP family protein | - |
Sequence
Protein
Download Length: 446 a.a. Molecular weight: 50309.08 Da Isoelectric Point: 9.1598
>NTDB_id=233703 CA592_RS09050 WP_004892696.1 1679333..1680673(-) (comFA) [Anoxybacillus flavithermus strain 52-1A]
MICLHLAGKQLLKSELSSSYDKQHVQIVESIVKTKQGYRCVRCNNDDQQLFASFPCARCGRICTYCRKCITMGRCSECNP
LVIWIGPTPSTSFSSPLQWNGQLSPAQQLASDEVCQAIDRNDSLLVWAVCGAGKTEVLFAGINMALSHGKRVCIAAPRTD
VVLELAPRLASVFPSVDMAALYGGSQDRGKLASLTVTTTHQLLRYYHAFDVMIVDEVDAFPYSVDAMLSYAVERARKPNS
SLIYLTATPNEQWQREVKSGQRKAVTIPARYHRHPLPVPTFEWCGNWQKKWRNQRLPSCVVRWVNEHLERNKQAFLFVPH
IDFLQQVVPYFQQFHPRIEGVHAEDPKRKEKVLAFRRGQIPLLVTTTILERGVTIPNIDVAVLGAEQPIFTESALVQIAG
RVGRSAQYPTGDVRFFHFGKTKAMVAAKQHIVRMNDEARKRGLIDE
MICLHLAGKQLLKSELSSSYDKQHVQIVESIVKTKQGYRCVRCNNDDQQLFASFPCARCGRICTYCRKCITMGRCSECNP
LVIWIGPTPSTSFSSPLQWNGQLSPAQQLASDEVCQAIDRNDSLLVWAVCGAGKTEVLFAGINMALSHGKRVCIAAPRTD
VVLELAPRLASVFPSVDMAALYGGSQDRGKLASLTVTTTHQLLRYYHAFDVMIVDEVDAFPYSVDAMLSYAVERARKPNS
SLIYLTATPNEQWQREVKSGQRKAVTIPARYHRHPLPVPTFEWCGNWQKKWRNQRLPSCVVRWVNEHLERNKQAFLFVPH
IDFLQQVVPYFQQFHPRIEGVHAEDPKRKEKVLAFRRGQIPLLVTTTILERGVTIPNIDVAVLGAEQPIFTESALVQIAG
RVGRSAQYPTGDVRFFHFGKTKAMVAAKQHIVRMNDEARKRGLIDE
Nucleotide
Download Length: 1341 bp
>NTDB_id=233703 CA592_RS09050 WP_004892696.1 1679333..1680673(-) (comFA) [Anoxybacillus flavithermus strain 52-1A]
GTGATTTGTTTGCATTTAGCAGGAAAACAGCTGCTTAAATCGGAACTTTCGTCTTCTTACGATAAGCAACATGTGCAGAT
CGTGGAGAGCATTGTAAAAACGAAGCAAGGCTATCGTTGCGTCCGTTGCAATAACGATGACCAACAGTTATTTGCTTCGT
TTCCGTGTGCGCGCTGTGGACGCATATGTACGTATTGCCGCAAATGTATAACGATGGGCCGATGTAGCGAATGTAATCCG
CTCGTGATTTGGATTGGACCAACTCCTTCTACCTCTTTTTCTTCACCGCTTCAATGGAATGGTCAATTATCTCCAGCTCA
ACAACTTGCATCCGATGAAGTTTGCCAAGCGATTGATCGAAACGACTCACTGCTCGTTTGGGCCGTATGCGGAGCGGGAA
AAACAGAAGTGCTATTTGCGGGCATTAACATGGCGCTGTCGCACGGAAAGCGCGTTTGCATTGCTGCTCCGCGCACCGAT
GTTGTATTAGAGTTAGCCCCGCGTTTGGCGAGTGTATTTCCGTCGGTCGATATGGCGGCATTATATGGCGGCAGCCAAGA
CCGTGGCAAACTTGCTTCATTGACGGTGACGACGACGCATCAGTTGCTTCGCTATTATCACGCTTTTGATGTGATGATTG
TCGATGAAGTCGATGCATTTCCGTATAGTGTAGATGCGATGCTTTCCTATGCGGTAGAACGGGCACGAAAACCGAACTCC
TCACTCATCTATTTAACCGCAACCCCAAACGAACAATGGCAACGTGAAGTAAAAAGTGGTCAACGTAAAGCGGTGACGAT
TCCTGCACGGTATCATCGCCATCCTCTTCCTGTTCCGACTTTTGAATGGTGCGGCAATTGGCAAAAAAAGTGGCGTAATC
AACGTTTGCCATCCTGTGTCGTTCGATGGGTAAACGAGCATCTCGAAAGAAACAAACAAGCCTTTTTATTCGTTCCTCAC
ATCGACTTTTTACAACAAGTTGTTCCGTATTTCCAACAATTTCATCCTCGCATTGAAGGAGTGCATGCTGAAGATCCGAA
ACGAAAGGAAAAAGTGCTTGCTTTTCGGCGTGGACAAATTCCGCTTCTTGTGACAACGACCATTTTAGAGCGCGGGGTAA
CGATCCCAAACATTGACGTTGCCGTGTTAGGTGCAGAGCAACCGATTTTTACAGAGAGTGCGCTTGTGCAAATCGCTGGA
CGTGTTGGCCGAAGCGCCCAATATCCGACAGGTGATGTTCGCTTTTTTCATTTTGGAAAAACGAAAGCGATGGTGGCGGC
TAAGCAGCATATTGTGCGCATGAATGATGAAGCGCGAAAGCGAGGGTTGATTGACGAATGA
GTGATTTGTTTGCATTTAGCAGGAAAACAGCTGCTTAAATCGGAACTTTCGTCTTCTTACGATAAGCAACATGTGCAGAT
CGTGGAGAGCATTGTAAAAACGAAGCAAGGCTATCGTTGCGTCCGTTGCAATAACGATGACCAACAGTTATTTGCTTCGT
TTCCGTGTGCGCGCTGTGGACGCATATGTACGTATTGCCGCAAATGTATAACGATGGGCCGATGTAGCGAATGTAATCCG
CTCGTGATTTGGATTGGACCAACTCCTTCTACCTCTTTTTCTTCACCGCTTCAATGGAATGGTCAATTATCTCCAGCTCA
ACAACTTGCATCCGATGAAGTTTGCCAAGCGATTGATCGAAACGACTCACTGCTCGTTTGGGCCGTATGCGGAGCGGGAA
AAACAGAAGTGCTATTTGCGGGCATTAACATGGCGCTGTCGCACGGAAAGCGCGTTTGCATTGCTGCTCCGCGCACCGAT
GTTGTATTAGAGTTAGCCCCGCGTTTGGCGAGTGTATTTCCGTCGGTCGATATGGCGGCATTATATGGCGGCAGCCAAGA
CCGTGGCAAACTTGCTTCATTGACGGTGACGACGACGCATCAGTTGCTTCGCTATTATCACGCTTTTGATGTGATGATTG
TCGATGAAGTCGATGCATTTCCGTATAGTGTAGATGCGATGCTTTCCTATGCGGTAGAACGGGCACGAAAACCGAACTCC
TCACTCATCTATTTAACCGCAACCCCAAACGAACAATGGCAACGTGAAGTAAAAAGTGGTCAACGTAAAGCGGTGACGAT
TCCTGCACGGTATCATCGCCATCCTCTTCCTGTTCCGACTTTTGAATGGTGCGGCAATTGGCAAAAAAAGTGGCGTAATC
AACGTTTGCCATCCTGTGTCGTTCGATGGGTAAACGAGCATCTCGAAAGAAACAAACAAGCCTTTTTATTCGTTCCTCAC
ATCGACTTTTTACAACAAGTTGTTCCGTATTTCCAACAATTTCATCCTCGCATTGAAGGAGTGCATGCTGAAGATCCGAA
ACGAAAGGAAAAAGTGCTTGCTTTTCGGCGTGGACAAATTCCGCTTCTTGTGACAACGACCATTTTAGAGCGCGGGGTAA
CGATCCCAAACATTGACGTTGCCGTGTTAGGTGCAGAGCAACCGATTTTTACAGAGAGTGCGCTTGTGCAAATCGCTGGA
CGTGTTGGCCGAAGCGCCCAATATCCGACAGGTGATGTTCGCTTTTTTCATTTTGGAAAAACGAAAGCGATGGTGGCGGC
TAAGCAGCATATTGTGCGCATGAATGATGAAGCGCGAAAGCGAGGGTTGATTGACGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
52.262 |
99.103 |
0.518 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
39.052 |
99.327 |
0.388 |
| comFA | Lactococcus lactis subsp. cremoris KW2 |
40.5 |
89.686 |
0.363 |