Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   CA592_RS06900 Genome accession   NZ_CP021838
Coordinates   1296954..1297907 (-) Length   317 a.a.
NCBI ID   WP_192949177.1    Uniprot ID   -
Organism   Anoxybacillus flavithermus strain 52-1A     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291954..1302907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA592_RS06875 (CA592_06875) - 1292768..1293508 (-) 741 WP_004891837.1 YjbA family protein -
  CA592_RS06880 (CA592_06880) - 1293585..1293791 (-) 207 WP_064221102.1 hypothetical protein -
  CA592_RS06885 (CA592_06885) - 1293796..1294569 (-) 774 WP_088223461.1 DUF2268 domain-containing protein -
  CA592_RS06890 (CA592_06890) fabF 1294640..1295881 (-) 1242 WP_088223462.1 beta-ketoacyl-ACP synthase II -
  CA592_RS06895 (CA592_06895) - 1295914..1296846 (-) 933 WP_004891851.1 beta-ketoacyl-ACP synthase III -
  CA592_RS06900 (CA592_06900) med 1296954..1297907 (-) 954 WP_192949177.1 BMP family ABC transporter substrate-binding protein Regulator
  CA592_RS06910 (CA592_06910) - 1298226..1298405 (+) 180 WP_064220507.1 YjzD family protein -
  CA592_RS06915 (CA592_06915) clpB 1298431..1301013 (-) 2583 WP_088223464.1 ATP-dependent chaperone ClpB -
  CA592_RS06920 (CA592_06920) - 1301099..1301278 (-) 180 WP_003395421.1 YjzC family protein -
  CA592_RS06925 (CA592_06925) argF 1301368..1302312 (-) 945 WP_004891859.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35443.07 Da        Isoelectric Point: 4.6712

>NTDB_id=233697 CA592_RS06900 WP_192949177.1 1296954..1297907(-) (med) [Anoxybacillus flavithermus strain 52-1A]
MWRYTYLIFALLVILSSCAPAQLSSGHVQKVGLLVPDTIDDQVWGTKGYKGLLRIQAKFGAEVFYREGVNSEAATKQAVK
EFHQKGVKLIFGHGNEYGEYFDDIAEKYPNIHFVFFNGEAKKKNVTSFNLQGHAMGFFGGMVAGHMTKTNNIGVIAAFEW
QPEVDGFFEGALYENENAHVDVEYVQNWDDINTALEIAERMIADGVDVIYPAGDKFSVPIIEKMKEYGLYAIGYVTDQSD
LGERTVLTSTVQHVDALYELVAQKFIDGELTSGTTYVDFQDGVVELGAFSPLVDESFQQKMTKAIERYKKTGKLPNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=233697 CA592_RS06900 WP_192949177.1 1296954..1297907(-) (med) [Anoxybacillus flavithermus strain 52-1A]
ATGTGGCGATATACATATTTGATTTTTGCACTACTTGTTATATTATCTTCTTGCGCTCCTGCTCAATTATCATCGGGACA
TGTACAAAAGGTTGGTTTGCTCGTTCCGGATACGATCGACGATCAAGTGTGGGGAACGAAAGGATATAAAGGGTTGCTTC
GTATTCAAGCGAAGTTTGGCGCTGAAGTGTTTTATCGGGAGGGTGTGAACTCGGAAGCGGCCACAAAACAGGCGGTAAAA
GAGTTTCATCAAAAAGGCGTTAAGTTAATTTTCGGGCACGGAAACGAATATGGGGAATATTTTGATGACATCGCGGAAAA
ATATCCGAACATACATTTTGTATTTTTTAACGGAGAGGCGAAAAAGAAAAACGTCACAAGCTTCAATCTCCAAGGACATG
CGATGGGCTTTTTTGGAGGCATGGTCGCAGGACATATGACGAAAACGAATAACATTGGCGTGATTGCCGCATTTGAATGG
CAGCCGGAAGTGGACGGTTTTTTCGAAGGAGCGTTATATGAAAACGAAAATGCCCATGTCGACGTCGAATATGTGCAAAA
TTGGGATGACATAAATACAGCTTTGGAGATTGCTGAGCGGATGATCGCAGATGGCGTAGATGTCATATACCCAGCTGGCG
ATAAATTTAGCGTACCGATCATTGAAAAAATGAAAGAATATGGGCTTTATGCGATCGGATATGTAACAGACCAATCAGAT
TTAGGGGAACGAACAGTGCTGACAAGCACCGTCCAACATGTCGATGCACTATATGAACTCGTTGCGCAAAAGTTTATCGA
TGGGGAGTTAACGTCAGGAACGACATATGTTGATTTTCAAGACGGTGTCGTTGAACTCGGCGCGTTTAGCCCGCTTGTAG
ATGAATCGTTTCAACAAAAAATGACAAAAGCGATTGAACGATATAAAAAAACGGGGAAATTGCCGAATGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

55.34

97.476

0.539

Multiple sequence alignment