Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEP79_RS04015 Genome accession   NZ_CP027404
Coordinates   812409..812867 (-) Length   152 a.a.
NCBI ID   WP_000783567.1    Uniprot ID   Q9ZMW8
Organism   Helicobacter pylori strain FDAARGOS_300     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 807409..817867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP79_RS04000 (CEP79_04000) - 807800..808582 (-) 783 WP_046655895.1 glycosyltransferase family 2 protein -
  CEP79_RS04005 (CEP79_04005) tlpB 808614..810311 (-) 1698 WP_082996424.1 methyl-accepting chemotaxis protein TlpB -
  CEP79_RS04010 (CEP79_04010) - 810523..812235 (-) 1713 WP_307772107.1 5'-nucleotidase C-terminal domain-containing protein -
  CEP79_RS04015 (CEP79_04015) luxS 812409..812867 (-) 459 WP_000783567.1 S-ribosylhomocysteine lyase Regulator
  CEP79_RS04020 (CEP79_04020) - 812905..814047 (-) 1143 WP_046655887.1 cystathionine gamma-synthase -
  CEP79_RS04025 (CEP79_04025) - 814072..814989 (-) 918 WP_046655885.1 O-acetylserine-dependent cystathionine beta-synthase -
  CEP79_RS04030 (CEP79_04030) - 815108..815679 (+) 572 Protein_752 hypothetical protein -
  CEP79_RS04035 (CEP79_04035) dnaK 815940..817802 (-) 1863 WP_046655882.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17423.87 Da        Isoelectric Point: 6.8403

>NTDB_id=233641 CEP79_RS04015 WP_000783567.1 812409..812867(-) (luxS) [Helicobacter pylori strain FDAARGOS_300]
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=233641 CEP79_RS04015 WP_000783567.1 812409..812867(-) (luxS) [Helicobacter pylori strain FDAARGOS_300]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAGAGATCACATGGACATGCCAAGCC
TACACTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACAGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
CGTGCTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGCGCAC
AGAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1J6X

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

92.763

0.382

Multiple sequence alignment