Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CEP79_RS01390 Genome accession   NZ_CP027404
Coordinates   300739..301788 (+) Length   349 a.a.
NCBI ID   WP_000115500.1    Uniprot ID   -
Organism   Helicobacter pylori strain FDAARGOS_300     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 295739..306788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP79_RS01370 (CEP79_01370) - 295804..296547 (+) 744 WP_046656246.1 carbonic anhydrase -
  CEP79_RS01375 (CEP79_01375) - 296778..297887 (-) 1110 WP_046656243.1 DUF874 family protein -
  CEP79_RS01380 (CEP79_01380) asd 298322..299362 (-) 1041 WP_000860865.1 aspartate-semialdehyde dehydrogenase -
  CEP79_RS01385 (CEP79_01385) hisS 299349..300677 (-) 1329 WP_000632487.1 histidine--tRNA ligase -
  CEP79_RS01390 (CEP79_01390) waaF 300739..301788 (+) 1050 WP_000115500.1 lipopolysaccharide heptosyltransferase II Regulator
  CEP79_RS08035 - 301972..302136 (-) 165 WP_000744175.1 hypothetical protein -
  CEP79_RS01405 (CEP79_01405) fusA 302679..304757 (-) 2079 WP_000101866.1 elongation factor G -
  CEP79_RS01410 (CEP79_01410) rpsG 304769..305236 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  CEP79_RS01415 (CEP79_01415) rpsL 305252..305659 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39521.19 Da        Isoelectric Point: 9.5546

>NTDB_id=233626 CEP79_RS01390 WP_000115500.1 300739..301788(+) (waaF) [Helicobacter pylori strain FDAARGOS_300]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFTDDTKKSFFRLLATYKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFDLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAVALLEKGHEIYFFGAKEDAIVSEEILKSVKNLLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=233626 CEP79_RS01390 WP_000115500.1 300739..301788(+) (waaF) [Helicobacter pylori strain FDAARGOS_300]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTAGGCCCAACCATTACGTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTACAGATGACACCAAAAAATCCTTTTTCAGGCTATTAGCCACTTACAAGCTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAACTACTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAATATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTGATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTCGCGGTTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GAGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAACTTATTGAAAAACCCCTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.135

97.994

0.364