Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CEQ27_RS10130 Genome accession   NZ_CP027394
Coordinates   1779052..1779567 (-) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli O104:H4 strain FDAARGOS_349     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774052..1784567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ27_RS10105 (CEQ27_10095) ygaZ 1774451..1775188 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CEQ27_RS10110 (CEQ27_10100) ygaH 1775178..1775513 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CEQ27_RS10115 (CEQ27_10105) emrR 1775604..1776134 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CEQ27_RS10120 (CEQ27_10110) emrA 1776261..1777433 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CEQ27_RS10125 (CEQ27_10115) emrB 1777450..1778988 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CEQ27_RS10130 (CEQ27_10120) luxS 1779052..1779567 (-) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CEQ27_RS10135 (CEQ27_10125) gshA 1779717..1781273 (-) 1557 WP_000611800.1 glutamate--cysteine ligase -
  CEQ27_RS10140 (CEQ27_10130) yqaA 1781346..1781774 (-) 429 WP_001287457.1 YqaA family protein -
  CEQ27_RS10145 (CEQ27_10135) yqaB 1781771..1782337 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CEQ27_RS10175 (CEQ27_10165) csrA 1783930..1784115 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=233559 CEQ27_RS10130 WP_001130210.1 1779052..1779567(-) (luxS) [Escherichia coli O104:H4 strain FDAARGOS_349]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233559 CEQ27_RS10130 WP_001130210.1 1779052..1779567(-) (luxS) [Escherichia coli O104:H4 strain FDAARGOS_349]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment