Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CEQ27_RS06620 Genome accession   NZ_CP027394
Coordinates   1065031..1066458 (+) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli O104:H4 strain FDAARGOS_349     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060031..1071458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ27_RS06595 (CEQ27_06585) - 1060529..1061047 (-) 519 Protein_1097 hypothetical protein -
  CEQ27_RS06600 (CEQ27_06590) - 1061142..1062122 (-) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  CEQ27_RS06605 (CEQ27_06595) - 1062315..1062866 (-) 552 Protein_1099 FUSC family protein -
  CEQ27_RS06610 (CEQ27_06600) sbmC 1063064..1063537 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CEQ27_RS06615 (CEQ27_06605) dacD 1063656..1064822 (-) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CEQ27_RS06620 (CEQ27_06610) sbcB 1065031..1066458 (+) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  CEQ27_RS06625 (CEQ27_06615) tsuB 1066501..1066728 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CEQ27_RS06630 (CEQ27_06620) tsuA 1066742..1067800 (-) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  CEQ27_RS06635 (CEQ27_06625) plaP 1067979..1069337 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CEQ27_RS06640 (CEQ27_06630) yoeI 1069327..1069389 (-) 63 WP_010723108.1 membrane protein YoeI -
  CEQ27_RS06645 (CEQ27_06635) yeeY 1069604..1070533 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CEQ27_RS06650 (CEQ27_06640) yeeZ 1070579..1071403 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=233550 CEQ27_RS06620 WP_000980568.1 1065031..1066458(+) (sbcB) [Escherichia coli O104:H4 strain FDAARGOS_349]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=233550 CEQ27_RS06620 WP_000980568.1 1065031..1066458(+) (sbcB) [Escherichia coli O104:H4 strain FDAARGOS_349]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment