Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AX062_RS28245 Genome accession   NZ_CP027390
Coordinates   5180228..5180743 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-4944     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5175228..5185743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX062_RS28200 csrA 5175948..5176133 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AX062_RS28230 yqaB 5177458..5178024 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AX062_RS28235 yqaA 5178021..5178449 (+) 429 WP_001287457.1 YqaA family protein -
  AX062_RS28240 gshA 5178522..5180078 (+) 1557 WP_000611769.1 glutamate--cysteine ligase -
  AX062_RS28245 luxS 5180228..5180743 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AX062_RS28250 emrB 5180807..5182345 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AX062_RS28255 emrA 5182362..5183534 (-) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AX062_RS28260 emrR 5183661..5184191 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AX062_RS28265 ygaH 5184282..5184617 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AX062_RS28270 ygaZ 5184607..5185344 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=233529 AX062_RS28245 WP_001130207.1 5180228..5180743(+) (luxS) [Escherichia coli strain 2015C-4944]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233529 AX062_RS28245 WP_001130207.1 5180228..5180743(+) (luxS) [Escherichia coli strain 2015C-4944]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment