Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AX062_RS11625 Genome accession   NZ_CP027390
Coordinates   1986071..1986700 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2015C-4944     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1981071..1991700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX062_RS11610 helD 1981313..1983367 (-) 2055 WP_001297106.1 DNA helicase IV -
  AX062_RS11615 yccF 1983490..1983936 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AX062_RS11620 yccS 1983946..1986108 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AX062_RS11625 sxy/tfoX 1986071..1986700 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AX062_RS11630 sulA 1986919..1987428 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AX062_RS11640 ompA 1987785..1988825 (+) 1041 WP_000750416.1 porin OmpA -
  AX062_RS11645 matP 1988900..1989352 (-) 453 WP_000877167.1 macrodomain Ter protein MatP -
  AX062_RS11650 ycbZ 1989538..1991298 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=233472 AX062_RS11625 WP_000839153.1 1986071..1986700(-) (sxy/tfoX) [Escherichia coli strain 2015C-4944]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=233472 AX062_RS11625 WP_000839153.1 1986071..1986700(-) (sxy/tfoX) [Escherichia coli strain 2015C-4944]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1