Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AX062_RS01790 Genome accession   NZ_CP027390
Coordinates   337987..339414 (-) Length   475 a.a.
NCBI ID   WP_000980547.1    Uniprot ID   -
Organism   Escherichia coli strain 2015C-4944     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332987..344414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX062_RS01760 yeeZ 333042..333866 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  AX062_RS01765 yeeY 333912..334841 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AX062_RS01770 yoeI 335056..335118 (+) 63 WP_010723108.1 membrane protein YoeI -
  AX062_RS01775 plaP 335108..336466 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AX062_RS01780 tsuA 336645..337703 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  AX062_RS01785 tsuB 337717..337944 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AX062_RS01790 sbcB 337987..339414 (-) 1428 WP_000980547.1 exodeoxyribonuclease I Machinery gene
  AX062_RS01795 dacD 339623..340789 (+) 1167 WP_000830141.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AX062_RS01800 sbmC 340907..341380 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  AX062_RS01805 yeeA 341578..342636 (+) 1059 WP_001200887.1 FUSC family protein -
  AX062_RS01810 tmaR 342808..343137 (+) 330 WP_000450409.1 DUF496 family protein -
  AX062_RS33180 - 343238..343603 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  AX062_RS32775 - 343874..344245 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54515.83 Da        Isoelectric Point: 5.3498

>NTDB_id=233458 AX062_RS01790 WP_000980547.1 337987..339414(-) (sbcB) [Escherichia coli strain 2015C-4944]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQETRAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=233458 AX062_RS01790 WP_000980547.1 337987..339414(-) (sbcB) [Escherichia coli strain 2015C-4944]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGACACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATACCG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579