Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   B9T62_RS12715 Genome accession   NZ_CP021780
Coordinates   2919476..2921227 (-) Length   583 a.a.
NCBI ID   WP_087915587.1    Uniprot ID   -
Organism   Paenibacillus donghaensis strain KCTC 13049     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2914476..2926227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9T62_RS12700 (B9T62_12815) - 2915017..2916579 (+) 1563 WP_245864440.1 iron ABC transporter permease -
  B9T62_RS12705 (B9T62_12820) - 2916576..2917604 (+) 1029 WP_087915585.1 ABC transporter ATP-binding protein -
  B9T62_RS12710 (B9T62_12825) rcrQ 2917716..2919476 (-) 1761 WP_087915586.1 ABC transporter ATP-binding protein Regulator
  B9T62_RS12715 (B9T62_12830) rcrP 2919476..2921227 (-) 1752 WP_087915587.1 ABC transporter ATP-binding protein Regulator
  B9T62_RS12720 (B9T62_12835) - 2921349..2922404 (-) 1056 WP_087915588.1 HAMP domain-containing sensor histidine kinase -
  B9T62_RS12725 (B9T62_12840) - 2922401..2923075 (-) 675 WP_087915589.1 response regulator transcription factor -
  B9T62_RS12730 (B9T62_12845) - 2923213..2923920 (+) 708 WP_087915590.1 DNA alkylation repair protein -
  B9T62_RS12735 (B9T62_12850) - 2924347..2925220 (+) 874 Protein_2560 MFS transporter -
  B9T62_RS12740 (B9T62_12855) - 2925278..2926168 (+) 891 WP_087915591.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64003.27 Da        Isoelectric Point: 5.0443

>NTDB_id=233454 B9T62_RS12715 WP_087915587.1 2919476..2921227(-) (rcrP) [Paenibacillus donghaensis strain KCTC 13049]
MVTILKYLKPKEWALFGISLLFIVTQVWLDLELPDYMSDITRLIQTPGSEMNEILAAGGWMLLCALGSLATSIIVAGIAA
RIAADFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWALLKITGKSWQWSLA
TGAAVGVLILVVGICIVLVLPKFQRLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANNELTRTNLFANNVMTM
MMPSISLIMSGLSLAIYWIGAVMIQNAAGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
ASLEDGLLTSSPMDRVGEVEFRNVSFKYPDAEECVIEDISFTVNQGETVAFIGSTGCGKSTLVNLIPRFYDATAGEVLVD
GINVSQYEQSALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLTSDVVDAVYTSQASDFVEKMEGSYEAQVAQGGSNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKESRGTTILIVAQRIGTIKDADRIIVLEAGRMAGMGTHD
ELMQSCSIYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=233454 B9T62_RS12715 WP_087915587.1 2919476..2921227(-) (rcrP) [Paenibacillus donghaensis strain KCTC 13049]
ATGGTCACTATACTCAAGTACTTGAAACCGAAGGAATGGGCCTTATTCGGTATCAGCCTGCTCTTCATTGTTACACAGGT
GTGGCTGGATCTGGAATTGCCCGATTACATGAGCGACATTACCCGTCTTATCCAGACGCCGGGAAGTGAAATGAACGAAA
TCCTAGCAGCCGGAGGCTGGATGTTGCTCTGTGCTTTGGGCAGCTTAGCCACCTCAATTATCGTTGCGGGGATTGCTGCC
AGAATTGCGGCTGATTTTTCCTCAAGATTACGCTCTAAATTGTTTGACAAGGTACAGTCCTTCTCCATGGAAGAAATCAA
CAACTTCTCTACGGCCAGTCTAATCACTCGTTCGACGAATGACATTACGCAAGTGCAAATGCTGATTGTCATTGGATTGC
AGCTGCTTGTGAAAGCCCCTATCCTTGCGGTGTGGGCGCTACTAAAGATCACGGGCAAGAGCTGGCAGTGGTCGCTTGCT
ACCGGCGCCGCTGTTGGTGTGTTAATTCTTGTTGTCGGCATTTGTATCGTGCTCGTGCTTCCGAAATTCCAAAGATTGCA
GCAACTGACAGACAACCTTAATCGGGTTGCAAGAGAGAACCTCACCGGACTTCGTGTCATTCGCGCGTATAATGCGGAAA
GCTATCAGGAAGATAAATTTAGCGTAGCCAACAATGAGCTTACCCGAACTAATTTATTCGCCAACAATGTAATGACCATG
ATGATGCCAAGTATTTCTCTCATAATGAGCGGTTTAAGTCTCGCTATCTACTGGATAGGTGCTGTAATGATTCAAAATGC
TGCTGGTACCGCCAAGATGGGCTTGTTTTCAGATATGATTGTGTTCTCATCCTATGCGATGCAGGTAGTAATGGCATTCA
TGATGTTGATCATGATCTTTATTCTAATGCCCCGTGCCCACGTATCTGCCAAAAGAATCAACGAAGTGCTGGATACTAAG
GCAAGCTTAGAGGACGGATTACTTACCTCCTCCCCGATGGATCGGGTTGGCGAAGTGGAATTCAGAAACGTCAGCTTTAA
ATATCCGGATGCAGAGGAATGCGTCATTGAGGACATCAGCTTTACGGTGAACCAAGGAGAAACTGTGGCATTCATTGGTT
CAACCGGATGCGGAAAAAGTACCCTTGTGAACCTGATCCCCCGCTTTTATGATGCTACAGCAGGTGAGGTGTTGGTTGAC
GGGATCAATGTTAGCCAATATGAGCAAAGTGCGCTGCGCAATAAAATGGGGTATGTCTCCCAGAAAGCGATTTTGTTTGG
CGGTACGGTGAGCTCCAATGTTGCTTTTGGCGATAATGGCAGTGACCTGACATCTGATGTTGTTGATGCCGTTTATACCT
CTCAAGCTTCGGATTTCGTTGAAAAGATGGAAGGAAGCTACGAGGCCCAAGTCGCCCAAGGCGGTTCGAACCTGTCCGGC
GGACAAAAACAACGTCTTTCGATTGCCCGGGCCATTGCGCGCCGTCCTGAAATATTGATCTTCGATGATTCCTTCTCTGC
ACTTGATTATAAGACAGACCGCAAACTGCGTAGTGAGCTGAAGAAAGAATCCCGCGGTACAACGATCCTGATTGTGGCCC
AACGGATCGGTACAATCAAAGACGCGGACAGAATTATTGTACTGGAAGCCGGGCGTATGGCAGGCATGGGAACACATGAT
GAATTAATGCAGTCCTGCAGCATTTACCAAGAGATTGCTTACTCACAACTTTCTAAGGAGGAGCTGGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-293)

ABC transporter (ABC_tran)

(357-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.181

100

0.533

Multiple sequence alignment