Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B9T62_RS12710 Genome accession   NZ_CP021780
Coordinates   2917716..2919476 (-) Length   586 a.a.
NCBI ID   WP_087915586.1    Uniprot ID   A0A2Z2K8I1
Organism   Paenibacillus donghaensis strain KCTC 13049     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912716..2924476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9T62_RS12690 (B9T62_12805) - 2912872..2913738 (+) 867 WP_087915582.1 Cof-type HAD-IIB family hydrolase -
  B9T62_RS12695 (B9T62_12810) - 2913763..2914806 (+) 1044 WP_087915583.1 ABC transporter substrate-binding protein -
  B9T62_RS12700 (B9T62_12815) - 2915017..2916579 (+) 1563 WP_245864440.1 iron ABC transporter permease -
  B9T62_RS12705 (B9T62_12820) - 2916576..2917604 (+) 1029 WP_087915585.1 ABC transporter ATP-binding protein -
  B9T62_RS12710 (B9T62_12825) rcrQ 2917716..2919476 (-) 1761 WP_087915586.1 ABC transporter ATP-binding protein Regulator
  B9T62_RS12715 (B9T62_12830) rcrP 2919476..2921227 (-) 1752 WP_087915587.1 ABC transporter ATP-binding protein Regulator
  B9T62_RS12720 (B9T62_12835) - 2921349..2922404 (-) 1056 WP_087915588.1 HAMP domain-containing sensor histidine kinase -
  B9T62_RS12725 (B9T62_12840) - 2922401..2923075 (-) 675 WP_087915589.1 response regulator transcription factor -
  B9T62_RS12730 (B9T62_12845) - 2923213..2923920 (+) 708 WP_087915590.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64244.51 Da        Isoelectric Point: 7.0590

>NTDB_id=233453 B9T62_RS12710 WP_087915586.1 2917716..2919476(-) (rcrQ) [Paenibacillus donghaensis strain KCTC 13049]
MNKSKAQLSTWSKLLRYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAITSIGLFLVFIYILS
AVLSLAQGLIMSIVTQKVSKSLRTDLSSKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGSLVTALALFVGSII
MMFKTNVLMTLTAIVATVIGFGLMAAIMKKSQKYFQSQQEYLGKINGHVEEVYSGHTVVKAYNGESQMRNTFESLNTNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVSVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFMDADEMDNESHKDSHLETAVGHVKFEHVQFAYENSDKLIIKDFSTEVKPGQKIAIVGPTGAGKTTLVNLLIRFNELK
GGGIYIDGTPISSLTRENIHDLFCIVLQDTWLFEGTIRENLVYNKPGVTDKEIEEACKSVGLHHFIQTLSAGYNTVLNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHNELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=233453 B9T62_RS12710 WP_087915586.1 2917716..2919476(-) (rcrQ) [Paenibacillus donghaensis strain KCTC 13049]
ATGAACAAGAGCAAAGCGCAACTGAGCACCTGGAGCAAACTTCTCCGTTATTGCAGAAAGTATATTCCTGTAGTTCTTAT
AGCAATTATCAGTGCGGCCATCGGTACGGTACTGACTTTGCTCGGGCCGGATAAGCTTTCGGAGATGACAGATTTGATCA
CCGCAGGCCTTGTCACCGGTATTGATATGGAAGCCATAACTTCCATCGGCCTCTTCCTTGTATTTATCTACATCCTTAGC
GCTGTATTGTCATTGGCACAAGGATTAATAATGTCCATAGTTACGCAAAAAGTCTCCAAAAGCTTACGAACGGATCTCTC
CAGTAAAATGAACAGACTTCCGATCTCTTATTATAATAAGTCAACAACCGGTGACATCCTGTCCCGGGTAACAAACGATG
TGGATACGATCGGGCAAGCCTTAAATCAAAGCGTTGGTTCACTGGTCACCGCCCTCGCCCTGTTTGTCGGGTCCATTATC
ATGATGTTCAAAACGAATGTGCTCATGACCCTTACAGCGATTGTTGCAACAGTCATTGGCTTCGGCCTCATGGCGGCCAT
TATGAAGAAATCTCAAAAGTACTTTCAAAGTCAGCAAGAATACTTAGGTAAAATCAATGGCCATGTGGAGGAAGTATATT
CAGGACATACTGTAGTGAAAGCCTACAATGGCGAATCGCAAATGCGCAATACCTTTGAATCCCTGAATACTAATCTGAAA
GATAGTGCATTTAAAGCACAGTTCCTCTCCGGTCTCATGATGCCGATTATGATGTTCATAGGAAATCTGGGGTTTGTGTC
CGTCTGTGTCGTAGGTGCTGTCCTTGCTATGAATGGAACGATATCCTTCGGGGTTATTGTAGCCTTCATCCTGTATGTCC
GTTACTTCACACAACCCCTGTCACAGATTGCGCAAGCCGCACAAAGTTTGCAATCGGCGTCCGCGGCAAGCAAACGAGTC
TTTGAATTCATGGATGCTGATGAAATGGACAATGAGAGTCATAAGGACAGCCATCTTGAAACTGCTGTGGGCCATGTGAA
ATTTGAACATGTGCAATTTGCTTATGAGAATTCAGACAAGCTTATTATTAAAGATTTCTCTACAGAAGTTAAGCCTGGGC
AAAAAATCGCTATAGTCGGTCCTACCGGCGCAGGTAAAACAACGCTTGTGAACCTGCTAATACGGTTTAATGAACTAAAA
GGCGGGGGAATTTATATTGACGGTACCCCGATCAGCAGTTTAACCCGAGAGAATATCCATGATTTATTCTGTATAGTTCT
GCAAGATACCTGGCTTTTTGAAGGCACCATCAGGGAGAATTTAGTGTATAACAAACCGGGCGTAACCGACAAAGAAATTG
AAGAGGCTTGTAAGTCGGTGGGCTTGCACCATTTCATCCAAACCTTAAGTGCCGGTTACAATACCGTATTGAATGACAAG
GTCAATCTATCCACCGGACAGAAGCAACAGCTAACAATCGCCCGCGCGATGCTCAAGAATGCGCCAATGCTTATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAACAGGCGATGGATAAGCTTATGGAAGGAAGAACCT
CCTTCGTTATTGCACATAGGCTCTCAACGATTAAGAATGCCGATGTGATTCTGGTTCTGAAAGATGGCGATATCTTGGAA
AGCGGAAGCCATAATGAACTGCTTGCCAAGAATGGCTTCTATGCGGAGCTGTACAATAGCCAATTCGAACAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z2K8I1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.575

99.488

0.553

Multiple sequence alignment