Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6P70_RS26875 Genome accession   NZ_CP027388
Coordinates   5022258..5022773 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 2011C-4251     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5017258..5027773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P70_RS26830 csrA 5017845..5018030 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6P70_RS26860 yqaB 5019488..5020054 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6P70_RS26865 yqaA 5020051..5020479 (+) 429 WP_001287454.1 YqaA family protein -
  C6P70_RS26870 gshA 5020552..5022108 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C6P70_RS26875 luxS 5022258..5022773 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  C6P70_RS26880 emrB 5022837..5024375 (-) 1539 WP_032363351.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6P70_RS26885 emrA 5024392..5025564 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6P70_RS26890 emrR 5025691..5026221 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6P70_RS26895 ygaH 5026312..5026647 (-) 336 WP_000119754.1 L-valine transporter subunit YgaH -
  C6P70_RS26900 ygaZ 5026637..5027374 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=233449 C6P70_RS26875 WP_001130210.1 5022258..5022773(+) (luxS) [Escherichia coli strain 2011C-4251]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233449 C6P70_RS26875 WP_001130210.1 5022258..5022773(+) (luxS) [Escherichia coli strain 2011C-4251]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737