Detailed information NTG0233446

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6P70_RS26570
• Genome accession: NZ_CP027388
• Coordinates: 4965118..4966110 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2011C-4251
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4960118..4971110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6P70_RS26540	ispD	4960179..4960889 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6P70_RS26545	ispF	4960889..4961368 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6P70_RS26550	truD	4961365..4962414 (+)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
C6P70_RS26555	surE	4962395..4963156 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6P70_RS26560	pcm	4963150..4963776 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6P70_RS26565	nlpD	4963961..4965055 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6P70_RS26570	rpoS	4965118..4966110 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6P70_RS26575	-	4966231..4966638 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6P70_RS26580	-	4966785..4967378 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6P70_RS26585	-	4967378..4968805 (+)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6P70_RS26590	-	4968816..4969070 (+)	255	WP_000562978.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6P70_RS26595	ygbN	4969109..4970473 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=233446 C6P70_RS26570 WP_000081550.1 4965118..4966110(+) (rpoS) [Escherichia coli strain 2011C-4251]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=233446 C6P70_RS26570 WP_000081550.1 4965118..4966110(+) (rpoS) [Escherichia coli strain 2011C-4251]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGCGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715