Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CDL16_RS11580 Genome accession   NZ_CP021775
Coordinates   2402493..2403128 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Pa58     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2397493..2408128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS11565 (CDL16_11565) - 2398199..2399443 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  CDL16_RS11570 (CDL16_11570) - 2399531..2400064 (-) 534 WP_087920905.1 DUF2062 domain-containing protein -
  CDL16_RS11575 (CDL16_11575) comA 2400195..2402420 (+) 2226 WP_003130690.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CDL16_RS11580 (CDL16_11580) exbB 2402493..2403128 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CDL16_RS11585 (CDL16_11585) - 2403125..2403565 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  CDL16_RS11590 (CDL16_11590) lpxK 2403565..2404563 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  CDL16_RS11595 (CDL16_11595) - 2404601..2404786 (+) 186 WP_003091157.1 Trm112 family protein -
  CDL16_RS11600 (CDL16_11600) kdsB 2404786..2405550 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CDL16_RS11605 (CDL16_11605) - 2405550..2406014 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  CDL16_RS11610 (CDL16_11610) murB 2406011..2407030 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=233422 CDL16_RS11580 WP_003091163.1 2402493..2403128(+) (exbB) [Pseudomonas aeruginosa strain Pa58]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=233422 CDL16_RS11580 WP_003091163.1 2402493..2403128(+) (exbB) [Pseudomonas aeruginosa strain Pa58]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment