Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   CDL16_RS10630 Genome accession   NZ_CP021775
Coordinates   2197472..2199790 (+) Length   772 a.a.
NCBI ID   WP_087920901.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2192472..2204790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS10610 (CDL16_10610) - 2193107..2193868 (+) 762 WP_003091396.1 class I SAM-dependent methyltransferase -
  CDL16_RS10615 (CDL16_10615) leuB 2193927..2195009 (+) 1083 WP_003091395.1 3-isopropylmalate dehydrogenase -
  CDL16_RS10620 (CDL16_10620) asd 2195079..2196191 (+) 1113 WP_003111187.1 aspartate-semialdehyde dehydrogenase -
  CDL16_RS10625 (CDL16_10625) - 2196293..2197303 (+) 1011 WP_003091393.1 aspartate-semialdehyde dehydrogenase -
  CDL16_RS10630 (CDL16_10630) fimV 2197472..2199790 (+) 2319 WP_087920901.1 FimV/HubP family polar landmark protein Machinery gene
  CDL16_RS10635 (CDL16_10635) truA 2199812..2200669 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  CDL16_RS10640 (CDL16_10640) - 2200759..2201394 (+) 636 WP_003091389.1 phosphoribosylanthranilate isomerase -
  CDL16_RS10645 (CDL16_10645) accD 2201663..2202535 (+) 873 WP_003104199.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  CDL16_RS10650 (CDL16_10650) folC 2202532..2203821 (+) 1290 WP_003130562.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  CDL16_RS10655 (CDL16_10655) - 2203825..2204472 (+) 648 WP_011666600.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 772 a.a.        Molecular weight: 81435.89 Da        Isoelectric Point: 4.2001

>NTDB_id=233420 CDL16_RS10630 WP_087920901.1 2197472..2199790(+) (fimV) [Pseudomonas aeruginosa strain Pa58]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFL
SGADEAATKLDLARAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=233420 CDL16_RS10630 WP_087920901.1 2197472..2199790(+) (fimV) [Pseudomonas aeruginosa strain Pa58]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAATGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCGCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTTGCGTTCCAGGAACTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGTTGATCCAGTTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCAGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTTCAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGTCG
CGCCGCAGGTCGAGAAGACCACTGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTCGACGACCTGTCGCTGGCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGA
GGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCG
CGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCTCCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTC
TCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCTCGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGA
TATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCAGCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.533

83.161

0.828

Multiple sequence alignment