Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6P70_RS10070 Genome accession   NZ_CP027388
Coordinates   1773222..1773851 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2011C-4251     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768222..1778851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P70_RS10055 helD 1768464..1770518 (-) 2055 WP_000420533.1 DNA helicase IV -
  C6P70_RS10060 yccF 1770641..1771087 (+) 447 WP_001261231.1 YccF domain-containing protein -
  C6P70_RS10065 yccS 1771097..1773259 (+) 2163 WP_000875044.1 YccS family putative transporter -
  C6P70_RS10070 sxy/tfoX 1773222..1773851 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6P70_RS10075 sulA 1774070..1774579 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6P70_RS10085 ompA 1774936..1775976 (+) 1041 WP_000750416.1 porin OmpA -
  C6P70_RS10090 matP 1776052..1776504 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C6P70_RS10095 ycbZ 1776690..1778450 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=233392 C6P70_RS10070 WP_000839153.1 1773222..1773851(-) (sxy/tfoX) [Escherichia coli strain 2011C-4251]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=233392 C6P70_RS10070 WP_000839153.1 1773222..1773851(-) (sxy/tfoX) [Escherichia coli strain 2011C-4251]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1