Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6P70_RS01620 Genome accession   NZ_CP027388
Coordinates   338445..339872 (-) Length   475 a.a.
NCBI ID   WP_000980608.1    Uniprot ID   -
Organism   Escherichia coli strain 2011C-4251     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 333445..344872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P70_RS01590 yeeZ 333500..334324 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C6P70_RS01595 yeeY 334370..335299 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6P70_RS01600 yoeI 335514..335576 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6P70_RS01605 plaP 335566..336924 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6P70_RS01610 tsuA 337103..338161 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  C6P70_RS01615 tsuB 338175..338402 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6P70_RS01620 sbcB 338445..339872 (-) 1428 WP_000980608.1 exodeoxyribonuclease I Machinery gene
  C6P70_RS01625 dacD 340081..341247 (+) 1167 Protein_306 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6P70_RS01630 sbmC 341366..341839 (+) 474 WP_001105383.1 DNA gyrase inhibitor SbmC -
  C6P70_RS01635 yeeA 342037..343095 (+) 1059 WP_001200891.1 FUSC family protein -
  C6P70_RS01640 tmaR 343267..343596 (+) 330 WP_000450409.1 DUF496 family protein -
  C6P70_RS30615 - 343697..343879 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C6P70_RS30190 - 343999..344079 (+) 81 WP_023441679.1 hypothetical protein -
  C6P70_RS29880 - 344368..344448 (-) 81 Protein_312 hypothetical protein -
  C6P70_RS01660 yeeW 344494..344688 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54457.75 Da        Isoelectric Point: 5.6070

>NTDB_id=233379 C6P70_RS01620 WP_000980608.1 338445..339872(-) (sbcB) [Escherichia coli strain 2011C-4251]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=233379 C6P70_RS01620 WP_000980608.1 338445..339872(-) (sbcB) [Escherichia coli strain 2011C-4251]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment