Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6P73_RS16715 Genome accession   NZ_CP027387
Coordinates   3163631..3164146 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3057     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3158631..3169146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P73_RS16670 csrA 3159351..3159536 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6P73_RS16700 yqaB 3160861..3161427 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6P73_RS16705 yqaA 3161424..3161852 (+) 429 WP_001287457.1 YqaA family protein -
  C6P73_RS16710 gshA 3161925..3163481 (+) 1557 WP_000611769.1 glutamate--cysteine ligase -
  C6P73_RS16715 luxS 3163631..3164146 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  C6P73_RS16720 emrB 3164210..3165748 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6P73_RS16725 emrA 3165765..3166937 (-) 1173 WP_001448625.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6P73_RS16730 emrR 3167064..3167594 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6P73_RS16735 ygaH 3167685..3168020 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6P73_RS16740 ygaZ 3168010..3168747 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=233353 C6P73_RS16715 WP_001130207.1 3163631..3164146(+) (luxS) [Escherichia coli strain 2014C-3057]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233353 C6P73_RS16715 WP_001130207.1 3163631..3164146(+) (luxS) [Escherichia coli strain 2014C-3057]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment