Detailed information NTG0233350

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6P73_RS16410
• Genome accession: NZ_CP027387
• Coordinates: 3106144..3107136 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-3057
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3101144..3112136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6P73_RS16380	ispD	3101266..3101915 (+)	650	Protein_2941	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6P73_RS16385	ispF	3101915..3102394 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6P73_RS16390	truD	3102391..3103440 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
C6P73_RS16395	surE	3103421..3104182 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6P73_RS16400	pcm	3104176..3104802 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6P73_RS16405	nlpD	3104987..3106081 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6P73_RS16410	rpoS	3106144..3107136 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6P73_RS16415	-	3107257..3107664 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
C6P73_RS16420	-	3107811..3108404 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6P73_RS16425	-	3108404..3109831 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6P73_RS16430	-	3109842..3110078 (+)	237	WP_000562988.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6P73_RS16435	ygbN	3110117..3111481 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=233350 C6P73_RS16410 WP_000081550.1 3106144..3107136(+) (rpoS) [Escherichia coli strain 2014C-3057]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=233350 C6P73_RS16410 WP_000081550.1 3106144..3107136(+) (rpoS) [Escherichia coli strain 2014C-3057]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715