Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PD_RS08580 Genome accession   NC_004556
Coordinates   1889742..1890128 (+) Length   128 a.a.
NCBI ID   WP_004083584.1    Uniprot ID   B2I7W3
Organism   Xylella fastidiosa Temecula1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1884742..1895128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS08560 (PD1628) - 1886156..1886341 (-) 186 WP_004089787.1 DUF2065 domain-containing protein -
  PD_RS08565 (PD1629) - 1886501..1887364 (-) 864 WP_004089788.1 protease modulator HflC -
  PD_RS08570 (PD1630) hflK 1887361..1888500 (-) 1140 WP_004089789.1 FtsH protease activity modulator HflK -
  PD_RS08575 (PD1631) - 1888645..1889649 (+) 1005 WP_004089790.1 oxidoreductase -
  PD_RS08580 (PD1632) pilH 1889742..1890128 (+) 387 WP_004083584.1 twitching motility response regulator PilH Machinery gene
  PD_RS08585 (PD1633) - 1890724..1891074 (-) 351 WP_004083585.1 DMT family protein -
  PD_RS08590 (PD1634) - 1892185..1892547 (-) 363 Protein_1695 H-NS family nucleoid-associated regulatory protein -
  PD_RS08595 (PD1635) - 1892691..1894385 (-) 1695 WP_011098191.1 proline--tRNA ligase -
  PD_RS08600 (PD1636) - 1894470..1894847 (-) 378 WP_012382718.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14261.45 Da        Isoelectric Point: 6.7299

>NTDB_id=23327 PD_RS08580 WP_004083584.1 1889742..1890128(+) (pilH) [Xylella fastidiosa Temecula1]
MARILIVEDSPSQLLSIQRIVEKLGHETITATDGNTGVEAAKAHLPDLVLMDVVMPKINGFQATRTLKREPATQHVPVVL
VTTKDQDTDRLWGIRQGARAYITKPFSESELLEVMERIFSQPKAKANE

Nucleotide


Download         Length: 387 bp        

>NTDB_id=23327 PD_RS08580 WP_004083584.1 1889742..1890128(+) (pilH) [Xylella fastidiosa Temecula1]
ATGGCACGCATTTTGATCGTCGAGGACTCACCGTCACAATTACTCAGCATCCAGAGAATCGTCGAGAAACTAGGGCACGA
AACAATTACCGCAACCGATGGCAACACCGGGGTAGAGGCAGCCAAAGCACATTTACCTGATCTGGTACTGATGGACGTGG
TCATGCCTAAAATTAATGGGTTTCAAGCCACACGCACACTCAAGCGCGAACCAGCAACGCAACATGTACCAGTCGTCCTG
GTAACCACCAAGGACCAAGACACTGATCGGCTATGGGGCATACGCCAGGGCGCGCGCGCCTACATCACCAAGCCTTTCTC
AGAGAGTGAATTGCTAGAAGTCATGGAAAGAATATTCAGCCAACCAAAAGCAAAAGCGAACGAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I7W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

41.176

92.969

0.383

Multiple sequence alignment