Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AYN27_RS17835 Genome accession   NZ_CP027380
Coordinates   3192283..3192867 (-) Length   194 a.a.
NCBI ID   WP_077825616.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-3250     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3187283..3197867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYN27_RS17820 helD 3187525..3189579 (-) 2055 WP_001297106.1 DNA helicase IV -
  AYN27_RS17825 yccF 3189702..3190148 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AYN27_RS17830 yccS 3190158..3192320 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AYN27_RS17835 sxy/tfoX 3192283..3192867 (-) 585 WP_077825616.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AYN27_RS17840 sulA 3193131..3193640 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AYN27_RS17850 ompA 3193997..3195037 (+) 1041 WP_000750416.1 porin OmpA -
  AYN27_RS17855 matP 3195113..3195565 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AYN27_RS17860 ycbZ 3195751..3197511 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22258.82 Da        Isoelectric Point: 8.4565

>NTDB_id=233255 AYN27_RS17835 WP_077825616.1 3192283..3192867(-) (sxy/tfoX) [Escherichia coli strain 2013C-3250]
MATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKL
VRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAI
IGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=233255 AYN27_RS17835 WP_077825616.1 3192283..3192867(-) (sxy/tfoX) [Escherichia coli strain 2013C-3250]
CTGGCAACGTTGGGCACAATTGAATACCGATCATTGTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGAT
GGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTGAGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGA
CATATAAAAAGTGTGGCCGATCCGTTACCCTCAATTACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTG
GTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCTGAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTT
GCCCAATATGTCTTTTCATCTGGAAGCGATTCTCGGGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGG
CAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAACAGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATT
ATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACGCCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACA
GGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(101-179)

TfoX N-terminal domain (TfoX_N)

(2-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.485

100

0.995

Multiple sequence alignment