Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6P66_RS16550 Genome accession   NZ_CP027373
Coordinates   3197642..3198157 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 05-3629     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3192642..3203157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P66_RS16505 csrA 3193229..3193414 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6P66_RS16535 yqaB 3194872..3195438 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6P66_RS16540 yqaA 3195435..3195863 (+) 429 WP_001287457.1 YqaA family protein -
  C6P66_RS16545 gshA 3195936..3197492 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6P66_RS16550 luxS 3197642..3198157 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6P66_RS16555 - 3198206..3199318 (-) 1113 WP_000638145.1 ATP-binding protein -
  C6P66_RS16560 - 3199315..3200022 (-) 708 WP_001097116.1 RNA ligase family protein -
  C6P66_RS16565 emrB 3200280..3201818 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6P66_RS16570 emrA 3201835..3203007 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=233193 C6P66_RS16550 WP_001130211.1 3197642..3198157(+) (luxS) [Escherichia coli strain 05-3629]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233193 C6P66_RS16550 WP_001130211.1 3197642..3198157(+) (luxS) [Escherichia coli strain 05-3629]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment