Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   C6P66_RS05400 Genome accession   NZ_CP027373
Coordinates   1010976..1011455 (-) Length   159 a.a.
NCBI ID   WP_097447683.1    Uniprot ID   -
Organism   Escherichia coli strain 05-3629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1005976..1016455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P66_RS05375 paoD 1007542..1008498 (+) 957 WP_000121356.1 molybdenum cofactor insertion chaperone PaoD -
  C6P66_RS05380 - 1008549..1008887 (+) 339 Protein_982 LysR substrate-binding domain-containing protein -
  C6P66_RS05385 - 1009246..1010022 (-) 777 WP_230282996.1 hypothetical protein -
  C6P66_RS05390 - 1010244..1010582 (-) 339 WP_001460496.1 TA system toxin CbtA family protein -
  C6P66_RS05395 - 1010607..1010933 (-) 327 WP_001460495.1 type IV toxin-antitoxin system YeeU family antitoxin -
  C6P66_RS05400 radC 1010976..1011455 (-) 480 WP_097447683.1 DNA repair protein RadC Machinery gene
  C6P66_RS05405 - 1011468..1011932 (-) 465 WP_001460493.1 antirestriction protein -
  C6P66_RS05410 - 1011993..1012811 (-) 819 WP_097447684.1 DUF932 domain-containing protein -
  C6P66_RS05415 - 1013274..1013897 (+) 624 WP_001461983.1 inovirus Gp2 family protein -
  C6P66_RS05420 - 1014016..1014231 (+) 216 WP_001461982.1 AlpA family transcriptional regulator -
  C6P66_RS05425 - 1014613..1016262 (-) 1650 WP_234695258.1 YfjI family protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17906.05 Da        Isoelectric Point: 8.3127

>NTDB_id=233147 C6P66_RS05400 WP_097447683.1 1010976..1011455(-) (radC) [Escherichia coli strain 05-3629]
MTDILLLPPPGLPPTVQRAIKRAQNHLEKYLRKPGILLTNPALTHEWLKLKLSGLEREIFMVLYLDSQLCLLEHETLFLG
TINNIEVHPREIIKSALRCNAARVILVHNHPSGVTDASKSDRVLTTRIVKTLDLVDVQVVDHLIIGNGNCLSFAERGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=233147 C6P66_RS05400 WP_097447683.1 1010976..1011455(-) (radC) [Escherichia coli strain 05-3629]
GTGACTGACATACTGTTACTGCCACCGCCTGGATTGCCCCCTACCGTTCAACGCGCGATTAAACGGGCACAAAATCATCT
GGAGAAATATCTGCGCAAACCCGGAATATTGCTGACGAATCCAGCACTGACTCACGAATGGCTGAAGCTGAAGTTATCCG
GGCTGGAGCGTGAGATCTTTATGGTTTTATATCTCGACAGCCAGTTATGCCTGCTTGAGCATGAAACGCTGTTTCTCGGC
ACCATAAACAATATCGAAGTTCATCCCCGCGAAATTATTAAATCGGCGCTGCGCTGCAATGCCGCAAGAGTGATTCTGGT
GCATAACCATCCATCAGGCGTTACCGATGCCAGTAAAAGCGACCGTGTTCTGACCACCCGGATTGTTAAAACGCTTGATC
TGGTAGATGTACAGGTGGTGGATCATCTCATCATTGGTAATGGCAACTGTCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.667

84.906

0.396

Multiple sequence alignment