Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6P67_RS14855 Genome accession   NZ_CP027371
Coordinates   2831223..2831738 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2015C-3905     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2826223..2836738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P67_RS14830 ygaZ 2826622..2827359 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C6P67_RS14835 ygaH 2827349..2827684 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6P67_RS14840 emrR 2827775..2828305 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6P67_RS14845 emrA 2828432..2829604 (+) 1173 WP_106879150.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6P67_RS14850 emrB 2829621..2831159 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6P67_RS14855 luxS 2831223..2831738 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6P67_RS14860 gshA 2831888..2833444 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6P67_RS14865 yqaA 2833517..2833945 (-) 429 WP_001287457.1 YqaA family protein -
  C6P67_RS14870 yqaB 2833942..2834508 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6P67_RS14900 csrA 2835966..2836151 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=233089 C6P67_RS14855 WP_001130211.1 2831223..2831738(-) (luxS) [Escherichia coli strain 2015C-3905]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=233089 C6P67_RS14855 WP_001130211.1 2831223..2831738(-) (luxS) [Escherichia coli strain 2015C-3905]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731