Detailed information NTG0233048

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6P71_RS24310
• Genome accession: NZ_CP027368
• Coordinates: 4668276..4669268 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-3307
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4663276..4674268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6P71_RS24280	ispD	4663337..4664047 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6P71_RS24285	ispF	4664047..4664526 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6P71_RS24290	truD	4664523..4665572 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6P71_RS24295	surE	4665553..4666314 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6P71_RS24300	pcm	4666308..4666934 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6P71_RS24305	nlpD	4667119..4668213 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6P71_RS24310	rpoS	4668276..4669268 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6P71_RS24315	-	4669389..4669796 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
C6P71_RS24320	-	4669943..4670536 (+)	594	WP_064560079.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6P71_RS24325	-	4670536..4671963 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6P71_RS24330	-	4671974..4672210 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6P71_RS24335	ygbN	4672249..4673613 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=233048 C6P71_RS24310 WP_000081550.1 4668276..4669268(+) (rpoS) [Escherichia coli strain 2014C-3307]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=233048 C6P71_RS24310 WP_000081550.1 4668276..4669268(+) (rpoS) [Escherichia coli strain 2014C-3307]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715