Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PD_RS03195 Genome accession   NC_004556
Coordinates   753586..754977 (-) Length   463 a.a.
NCBI ID   WP_011097721.1    Uniprot ID   B2I9J4
Organism   Xylella fastidiosa Temecula1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 748586..759977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS03175 (PD0610) truA 749265..750035 (+) 771 WP_004090661.1 tRNA pseudouridine(38-40) synthase TruA -
  PD_RS03180 (PD0611) - 750032..750694 (+) 663 WP_004090663.1 phosphoribosylanthranilate isomerase -
  PD_RS03185 (PD0612) trpB 751196..752413 (+) 1218 WP_011097720.1 tryptophan synthase subunit beta -
  PD_RS03190 (PD0613) trpA 752539..753345 (+) 807 WP_004083823.1 tryptophan synthase subunit alpha -
  PD_RS03195 (PD0614) radA/sms 753586..754977 (-) 1392 WP_011097721.1 DNA repair protein RadA Machinery gene
  PD_RS03200 (PD0615) - 755155..756120 (+) 966 WP_011097722.1 LLM class flavin-dependent oxidoreductase -
  PD_RS03205 (PD0616) - 756321..756800 (-) 480 WP_004083818.1 hypothetical protein -
  PD_RS03210 (PD0617) recQ 756923..758725 (-) 1803 WP_011097723.1 DNA helicase RecQ Machinery gene
  PD_RS03215 (PD0618) - 758906..759448 (-) 543 WP_004090677.1 Dps family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49369.62 Da        Isoelectric Point: 7.6825

>NTDB_id=23302 PD_RS03195 WP_011097721.1 753586..754977(-) (radA/sms) [Xylella fastidiosa Temecula1]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=23302 PD_RS03195 WP_011097721.1 753586..754977(-) (radA/sms) [Xylella fastidiosa Temecula1]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCACCTGGAATTGCTTAAGCCAAATCACCCTCGGAAATGCAGGATCTGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCAACCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGGCGTGCGGTGCGCCTGGATCTGCCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAGCACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGTGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAATCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACGCGTGAGGGAACACGTCCTCTGATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTTACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTATTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCAGAAAAGACCATC
GCCTTCGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAGCACGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-38)

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

AAA domain (AAA_25)

(91-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I9J4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.415

98.92

0.449
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421

Multiple sequence alignment