Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6P71_RS02365 Genome accession   NZ_CP027368
Coordinates   474457..475884 (-) Length   475 a.a.
NCBI ID   WP_072146012.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3307     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469457..480884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P71_RS02335 yeeZ 469513..470337 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  C6P71_RS02340 yeeY 470383..471312 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6P71_RS02345 yoeI 471526..471588 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6P71_RS02350 plaP 471578..472936 (+) 1359 WP_032195609.1 putrescine/proton symporter PlaP -
  C6P71_RS02355 tsuA 473115..474173 (+) 1059 WP_032195608.1 thiosulfate utilization transporter TsuA/YeeE -
  C6P71_RS02360 tsuB 474187..474414 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6P71_RS02365 sbcB 474457..475884 (-) 1428 WP_072146012.1 exodeoxyribonuclease I Machinery gene
  C6P71_RS02370 dacD 476093..477259 (+) 1167 WP_032195607.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6P71_RS02375 sbmC 477378..477851 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  C6P71_RS02380 yeeA 478049..479107 (+) 1059 WP_001200891.1 FUSC family protein -
  C6P71_RS02385 tmaR 479279..479608 (+) 330 WP_000450409.1 DUF496 family protein -
  C6P71_RS02390 - 479709..480152 (-) 444 WP_001189430.1 EutP/PduV family microcompartment system protein -
  C6P71_RS02395 pduU 480157..480507 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54460.75 Da        Isoelectric Point: 5.5939

>NTDB_id=232987 C6P71_RS02365 WP_072146012.1 474457..475884(-) (sbcB) [Escherichia coli strain 2014C-3307]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQHADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=232987 C6P71_RS02365 WP_072146012.1 474457..475884(-) (sbcB) [Escherichia coli strain 2014C-3307]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGACGTTATGCGTGCCTGTTATGCCCTGCGCCCTGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCAGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCACAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAC
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

98.947

0.587

Multiple sequence alignment