Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM397_RS18970 Genome accession   NZ_CP021736
Coordinates   3739503..3740132 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain AR_0150     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3734503..3745132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM397_RS18945 (AM397_18865) ycbZ 3734904..3736664 (-) 1761 WP_000152888.1 Lon protease family protein -
  AM397_RS18950 (AM397_18870) matP 3736850..3737302 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AM397_RS18955 (AM397_18875) ompA 3737378..3738418 (-) 1041 WP_039023125.1 porin OmpA -
  AM397_RS18965 (AM397_18885) sulA 3738775..3739284 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AM397_RS18970 (AM397_18890) sxy/tfoX 3739503..3740132 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AM397_RS18975 (AM397_18895) yccS 3740095..3742257 (-) 2163 WP_000875058.1 YccS family putative transporter -
  AM397_RS18980 (AM397_18900) yccF 3742267..3742713 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AM397_RS18985 (AM397_18905) helD 3742836..3744890 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=232975 AM397_RS18970 WP_000839153.1 3739503..3740132(+) (sxy/tfoX) [Escherichia coli strain AR_0150]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=232975 AM397_RS18970 WP_000839153.1 3739503..3740132(+) (sxy/tfoX) [Escherichia coli strain AR_0150]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment