Detailed information
Bioinformatically predicted
Overview
| Name | exbB | Type | Machinery gene |
| Locus tag | PD_RS01890 | Genome accession | NC_004556 |
| Coordinates | 449724..450386 (+) | Length | 220 a.a. |
| NCBI ID | WP_004085189.1 | Uniprot ID | Q9PEE9 |
| Organism | Xylella fastidiosa Temecula1 | ||
| Function | ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 444724..455386
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD_RS01875 (PD0356) | - | 444958..446199 (+) | 1242 | WP_004089276.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| PD_RS01880 (PD0357) | lolD | 446192..446914 (+) | 723 | WP_004089270.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| PD_RS01885 (PD0358) | comA | 447262..449739 (+) | 2478 | WP_038231910.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
| PD_RS01890 (PD0359) | exbB | 449724..450386 (+) | 663 | WP_004085189.1 | MotA/TolQ/ExbB proton channel family protein | Machinery gene |
| PD_RS01895 (PD0360) | - | 450391..450828 (+) | 438 | WP_004089267.1 | ExbD/TolR family protein | - |
| PD_RS01900 (PD0361) | msbA | 450846..452594 (+) | 1749 | WP_004089264.1 | lipid A export permease/ATP-binding protein MsbA | - |
| PD_RS01905 (PD0362) | lpxK | 452591..453610 (+) | 1020 | WP_004089261.1 | tetraacyldisaccharide 4'-kinase | - |
| PD_RS01910 (PD0363) | - | 454017..454718 (-) | 702 | WP_228446162.1 | phage late control D family protein | - |
Sequence
Protein
Download Length: 220 a.a. Molecular weight: 24000.41 Da Isoelectric Point: 8.9727
>NTDB_id=23295 PD_RS01890 WP_004085189.1 449724..450386(+) (exbB) [Xylella fastidiosa Temecula1]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD
Nucleotide
Download Length: 663 bp
>NTDB_id=23295 PD_RS01890 WP_004085189.1 449724..450386(+) (exbB) [Xylella fastidiosa Temecula1]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| exbB | Pseudomonas stutzeri DSM 10701 |
48.744 |
90.455 |
0.441 |