Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PD_RS00625 Genome accession   NC_004556
Coordinates   149595..150269 (-) Length   224 a.a.
NCBI ID   WP_011097508.1    Uniprot ID   Q87F21
Organism   Xylella fastidiosa Temecula1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 144595..155269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PD_RS00610 (PD0114) - 146050..146865 (-) 816 WP_004087583.1 SDR family NAD(P)-dependent oxidoreductase -
  PD_RS00615 (PD0115) - 146994..147740 (-) 747 WP_004087582.1 SPOR domain-containing protein -
  PD_RS00620 (PD0116) argS 147780..149468 (-) 1689 WP_011097507.1 arginine--tRNA ligase -
  PD_RS00625 (PD0117) radC 149595..150269 (-) 675 WP_011097508.1 RadC family protein Machinery gene
  PD_RS00630 (PD0118) coaBC 150367..151596 (+) 1230 WP_011097509.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PD_RS00635 (PD0119) dut 151593..152060 (+) 468 WP_004087579.1 dUTP diphosphatase -
  PD_RS12955 - 152074..154608 (+) 2535 WP_041581091.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24590.10 Da        Isoelectric Point: 8.2711

>NTDB_id=23293 PD_RS00625 WP_011097508.1 149595..150269(-) (radC) [Xylella fastidiosa Temecula1]
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=23293 PD_RS00625 WP_011097508.1 149595..150269(-) (radC) [Xylella fastidiosa Temecula1]
ATGCACATCAACAACTGGCCTACGCATGAACGACCACGTGAAAAACTGCTGGCCCACGGTGCCGCCACACTTTCGGATGC
AGAACTGCTCGCAATCTTCCTAGGCTCCGGCCTACGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTC
ATGGTCCACTACGAGAACTGCTGGACCGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCATGC
AAACTCACCGCAGCACTGGAATTAAGCACCCGCCACCTGGCAGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAAT
CAGCGCCGGACGCTATTTCGCACAGCGCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGC
ACCGCGCGATCAGCTTTGAAGAATTGTTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGC
GCATTAACTCTGAACGCAGCGGCAGTGATCGTCGGCCATAATCACCCATCCGGTAATCGCGAACCATCACCAGCCGACCA
AATGATCACCCAACGCTTGAAAAACGCCTTAGACCTCATCGACGTGCGCCTAGTCGACCACTTCGTGATTGGTGACGGTG
CGCCGGTCTCATTCGCCGAACATGGCTGGCTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87F21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.662

95.089

0.415

Multiple sequence alignment