Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   CDA09_RS18725 Genome accession   NZ_CP021731
Coordinates   4047812..4048207 (+) Length   131 a.a.
NCBI ID   WP_121430030.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4042812..4053207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS18705 (CDA09_18680) mgtE 4042902..4044344 (+) 1443 WP_121430027.1 magnesium transporter -
  CDA09_RS18710 (CDA09_18685) hemL 4044452..4045735 (-) 1284 WP_121430028.1 glutamate-1-semialdehyde 2,1-aminomutase -
  CDA09_RS18715 (CDA09_18690) thiE 4045813..4046451 (-) 639 WP_121430029.1 thiamine phosphate synthase -
  CDA09_RS18720 (CDA09_18695) - 4046438..4047421 (-) 984 WP_174718460.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CDA09_RS18725 (CDA09_18700) pilG 4047812..4048207 (+) 396 WP_121430030.1 response regulator Regulator
  CDA09_RS18730 (CDA09_18705) - 4048224..4048589 (+) 366 WP_121430031.1 response regulator -
  CDA09_RS18735 (CDA09_18710) - 4048595..4049110 (+) 516 WP_121430032.1 chemotaxis protein CheW -
  CDA09_RS18740 (CDA09_18715) - 4049177..4051312 (+) 2136 WP_121430033.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14347.66 Da        Isoelectric Point: 8.5220

>NTDB_id=232925 CDA09_RS18725 WP_121430030.1 4047812..4048207(+) (pilG) [Azoarcus sp. DN11]
MNLTGLKVMVIDDSNTIRRSAEIFLTHSGCQVLLAEDGFDALAKIADHRPDVIFVDIMMPRLDGYQTCALIKKNAQLATT
PVIMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLKAVATHAARKAGANH

Nucleotide


Download         Length: 396 bp        

>NTDB_id=232925 CDA09_RS18725 WP_121430030.1 4047812..4048207(+) (pilG) [Azoarcus sp. DN11]
ATGAATCTGACCGGACTCAAGGTGATGGTGATCGACGACAGCAACACGATCCGCCGCAGCGCCGAGATCTTTCTCACGCA
CTCCGGCTGCCAGGTGCTGCTTGCCGAAGACGGTTTCGACGCCCTCGCGAAGATCGCCGACCATCGTCCCGACGTGATTT
TCGTCGACATCATGATGCCGCGCCTCGACGGCTACCAGACCTGCGCGCTGATCAAGAAAAACGCGCAGCTCGCCACGACG
CCGGTCATCATGCTGTCGTCCAAGGACGGCCTCTTCGACCGCGCACGCGGCCGTATGGTCGGCTCCGACGAATACCTCAC
CAAGCCTTTCACCAAGGACAGCCTCCTCAAGGCGGTTGCCACCCACGCCGCACGCAAGGCCGGCGCGAATCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.213

93.13

0.626

Multiple sequence alignment