Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CDA09_RS12685 Genome accession   NZ_CP021731
Coordinates   2768489..2769862 (-) Length   457 a.a.
NCBI ID   WP_121429036.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2763489..2774862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS12665 (CDA09_12665) - 2764691..2765398 (-) 708 WP_121429032.1 ABC transporter ATP-binding protein -
  CDA09_RS12670 (CDA09_12670) - 2765400..2766593 (-) 1194 WP_121429033.1 ABC transporter permease -
  CDA09_RS12675 (CDA09_12675) - 2766590..2767774 (-) 1185 WP_121429034.1 efflux RND transporter periplasmic adaptor subunit -
  CDA09_RS12680 (CDA09_12680) - 2767771..2768397 (-) 627 WP_286164112.1 TetR/AcrR family transcriptional regulator -
  CDA09_RS12685 (CDA09_12685) radA 2768489..2769862 (-) 1374 WP_121429036.1 DNA repair protein RadA Machinery gene
  CDA09_RS12690 (CDA09_12690) - 2769862..2770779 (-) 918 WP_121429037.1 LysR family transcriptional regulator -
  CDA09_RS12695 (CDA09_12695) lplT 2770958..2772211 (+) 1254 WP_121429038.1 lysophospholipid transporter LplT -
  CDA09_RS12700 (CDA09_12700) - 2772266..2773126 (-) 861 WP_121430858.1 uracil-DNA glycosylase family protein -
  CDA09_RS12705 (CDA09_12705) rimI 2773159..2773611 (-) 453 WP_286164114.1 ribosomal protein S18-alanine N-acetyltransferase -
  CDA09_RS12710 (CDA09_12710) tsaB 2773608..2774300 (-) 693 WP_121429039.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  CDA09_RS12715 (CDA09_12715) - 2774373..2774684 (-) 312 WP_121429040.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48444.85 Da        Isoelectric Point: 7.6502

>NTDB_id=232917 CDA09_RS12685 WP_121429036.1 2768489..2769862(-) (radA) [Azoarcus sp. DN11]
MAKAKTSFVCSECGGQAPRWQGQCPQCKGWNTLVETVIEAPGPGSSRFAALAGTTGKLQSLAELEPREEPRTPTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALSALAARQAAVYVSGEESGEQVALRAQRLQLDPAGVKLLPEINLERILAT
LKEAKPRIAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRFAKQSGTSLIMVGHVTKDGTLAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHSQQVAGSCVLVTQEGTRPLLVEIQALVDGAHSPN
PRRLSVGLEQNRLAMLLAVLHRHAGVVCFDQDVFVNAVGGVKIAEPAADLAVLLAIVSSLRSRPLPRELVVFGEVGLAGE
IRPAPRGQERLKEAAKLGFTVAIIPKANAPKQAIAGMRVIAVDRIEEAIEQARELEA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=232917 CDA09_RS12685 WP_121429036.1 2768489..2769862(-) (radA) [Azoarcus sp. DN11]
ATGGCGAAAGCGAAGACGAGCTTCGTCTGCAGCGAATGCGGCGGCCAGGCGCCGCGCTGGCAGGGGCAGTGCCCGCAGTG
CAAGGGCTGGAACACGCTGGTCGAGACGGTGATCGAGGCGCCGGGGCCGGGGAGCAGCCGGTTCGCGGCGCTCGCCGGCA
CGACCGGCAAGCTGCAGTCGCTGGCGGAACTGGAGCCGCGCGAGGAGCCGAGGACGCCGACCGGGATCGAGGAGTTCGAC
CGGGTGCTCGGCGGCGGGCTGGTGGCGGGCGGCGTGGTGCTGATCGGAGGCGATCCGGGCATCGGCAAGTCGACGCTGCT
GTTGCAGGCGCTGTCGGCGCTTGCGGCGCGGCAGGCGGCGGTCTACGTGAGCGGCGAGGAGTCGGGCGAGCAGGTGGCCC
TGCGGGCGCAGCGCCTGCAGCTCGACCCGGCGGGGGTGAAGCTGCTGCCGGAGATCAACCTCGAGCGCATCCTCGCGACG
CTGAAGGAAGCAAAACCGCGCATCGCGGTGATCGACTCGATCCAGACGGTGTATTCGGAAGCGCTGCAGTCGGCGCCCGG
TTCGGTGGCGCAGGTGCGCGAGTGCGCGGCGCAACTCACGCGCTTTGCGAAGCAGAGCGGCACGAGCCTGATCATGGTCG
GTCACGTGACGAAGGATGGCACGCTGGCGGGGCCGCGGGTGCTGGAGCATATCGTCGACACCGTGCTGTACTTCGAAGGC
GATACGCATTCGAGTTTCCGCCTGGTGCGGGCGTTCAAGAACCGTTTCGGCGCCGTGAACGAGCTGGGCGTGTTCGCGAT
GACCGAGCGCGGCCTGCGCGGCGTGAGCAATCCGTCGGCGATCTTCCTGTCGCAGCACAGCCAGCAGGTGGCGGGCAGCT
GCGTGCTGGTGACGCAGGAGGGCACGCGGCCGTTGCTGGTGGAGATCCAGGCGCTGGTCGATGGCGCGCACAGCCCGAAT
CCGCGCCGCCTCTCGGTCGGCCTGGAACAGAACCGGCTGGCGATGCTGCTCGCGGTGCTGCACCGCCACGCGGGCGTGGT
GTGCTTCGACCAGGATGTGTTCGTGAACGCGGTGGGGGGCGTGAAGATCGCCGAGCCGGCAGCGGACCTTGCGGTGCTGC
TGGCGATCGTGTCCTCGCTGCGCAGCCGGCCCTTGCCGCGCGAGCTGGTGGTGTTCGGGGAAGTGGGGCTCGCGGGCGAG
ATCCGTCCGGCGCCGCGCGGGCAGGAGCGCCTGAAGGAAGCAGCGAAGCTCGGCTTCACGGTCGCGATCATTCCGAAGGC
CAACGCGCCCAAGCAGGCGATTGCGGGAATGCGGGTGATCGCGGTGGATCGGATCGAGGAAGCGATCGAGCAGGCGCGCG
AGCTGGAAGCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.561

99.781

0.495
  radA Streptococcus pneumoniae Rx1

47.046

100

0.47
  radA Streptococcus pneumoniae D39

47.046

100

0.47
  radA Streptococcus pneumoniae R6

47.046

100

0.47
  radA Streptococcus pneumoniae TIGR4

47.046

100

0.47
  radA Streptococcus mitis SK321

46.943

100

0.47
  radA Streptococcus mitis NCTC 12261

46.827

100

0.468

Multiple sequence alignment