Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CDC27_RS04195 Genome accession   NZ_CP021726
Coordinates   837440..838069 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Combat11I9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 832440..843069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDC27_RS04170 (CDC27_04195) ycbZ 832829..834589 (-) 1761 WP_072686301.1 Lon protease family protein -
  CDC27_RS04175 (CDC27_04200) matP 834775..835227 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  CDC27_RS04180 (CDC27_04205) ompA 835303..836355 (-) 1053 WP_021577220.1 porin OmpA -
  CDC27_RS04190 (CDC27_04215) sulA 836712..837221 (-) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  CDC27_RS04195 (CDC27_04220) sxy/tfoX 837440..838069 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CDC27_RS04200 (CDC27_04225) yccS 838032..840194 (-) 2163 WP_000323868.1 YccS family putative transporter -
  CDC27_RS04205 (CDC27_04230) yccF 840204..840650 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CDC27_RS04210 (CDC27_04235) helD 840773..842827 (+) 2055 WP_072686303.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=232891 CDC27_RS04195 WP_000839153.1 837440..838069(+) (sxy/tfoX) [Escherichia coli strain Combat11I9]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=232891 CDC27_RS04195 WP_000839153.1 837440..838069(+) (sxy/tfoX) [Escherichia coli strain Combat11I9]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment