Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6P51_RS10055 Genome accession   NZ_CP027362
Coordinates   1841951..1842466 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 95-3192     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1836951..1847466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P51_RS10035 emrA 1837101..1838273 (+) 1173 WP_001400789.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6P51_RS10040 emrB 1838290..1839828 (+) 1539 WP_001400788.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6P51_RS10045 - 1840086..1840793 (+) 708 WP_001097117.1 RNA ligase family protein -
  C6P51_RS10050 - 1840790..1841902 (+) 1113 Protein_1850 AAA family ATPase -
  C6P51_RS10055 luxS 1841951..1842466 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6P51_RS10060 gshA 1842616..1844172 (-) 1557 WP_000611829.1 glutamate--cysteine ligase -
  C6P51_RS10065 yqaA 1844245..1844673 (-) 429 WP_001287453.1 YqaA family protein -
  C6P51_RS10070 yqaB 1844670..1845236 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6P51_RS10100 csrA 1846694..1846879 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=232843 C6P51_RS10055 WP_001130211.1 1841951..1842466(-) (luxS) [Escherichia coli strain 95-3192]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232843 C6P51_RS10055 WP_001130211.1 1841951..1842466(-) (luxS) [Escherichia coli strain 95-3192]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment