Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6P51_RS06445 Genome accession   NZ_CP027362
Coordinates   1104276..1105703 (+) Length   475 a.a.
NCBI ID   WP_000980539.1    Uniprot ID   -
Organism   Escherichia coli strain 95-3192     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099276..1110703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P51_RS06405 yeeW 1099460..1099654 (+) 195 WP_000988600.1 DUF5983 family protein -
  C6P51_RS28735 - 1099700..1099780 (+) 81 Protein_1179 hypothetical protein -
  C6P51_RS06420 - 1100269..1100451 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  C6P51_RS06425 tmaR 1100552..1100881 (-) 330 WP_000450409.1 DUF496 family protein -
  C6P51_RS06430 yeeA 1101053..1102111 (-) 1059 WP_001200905.1 FUSC family protein -
  C6P51_RS06435 sbmC 1102309..1102782 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  C6P51_RS06440 dacD 1102901..1104067 (-) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6P51_RS06445 sbcB 1104276..1105703 (+) 1428 WP_000980539.1 exodeoxyribonuclease I Machinery gene
  C6P51_RS06450 tsuB 1105746..1105973 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6P51_RS06455 tsuA 1105987..1107045 (-) 1059 WP_000492332.1 thiosulfate utilization transporter TsuA/YeeE -
  C6P51_RS06460 plaP 1107224..1108582 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6P51_RS06465 yoeI 1108572..1108634 (-) 63 WP_010723108.1 membrane protein YoeI -
  C6P51_RS06470 yeeY 1108849..1109778 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6P51_RS06475 yeeZ 1109824..1110648 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.3498

>NTDB_id=232834 C6P51_RS06445 WP_000980539.1 1104276..1105703(+) (sbcB) [Escherichia coli strain 95-3192]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=232834 C6P51_RS06445 WP_000980539.1 1104276..1105703(+) (sbcB) [Escherichia coli strain 95-3192]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGTTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment