Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6P55_RS26755 Genome accession   NZ_CP027355
Coordinates   5000120..5000635 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2013C-4991     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4995120..5005635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P55_RS26710 csrA 4995707..4995892 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6P55_RS26740 yqaB 4997350..4997916 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6P55_RS26745 yqaA 4997913..4998341 (+) 429 WP_001287454.1 YqaA family protein -
  C6P55_RS26750 gshA 4998414..4999970 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C6P55_RS26755 luxS 5000120..5000635 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6P55_RS26760 emrB 5000699..5002237 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6P55_RS26765 emrA 5002254..5003426 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6P55_RS26770 emrR 5003553..5004083 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6P55_RS26775 ygaH 5004174..5004509 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6P55_RS26780 ygaZ 5004499..5005236 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=232819 C6P55_RS26755 WP_001130211.1 5000120..5000635(+) (luxS) [Escherichia coli strain 2013C-4991]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=232819 C6P55_RS26755 WP_001130211.1 5000120..5000635(+) (luxS) [Escherichia coli strain 2013C-4991]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGATGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment