Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CCD88_RS07210 Genome accession   NZ_CP021724
Coordinates   1272465..1272929 (-) Length   154 a.a.
NCBI ID   WP_010981060.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267465..1277929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS07185 (CCD88_07265) - 1268749..1269021 (-) 273 WP_002212673.1 ACT domain-containing protein -
  CCD88_RS07190 (CCD88_07270) - 1269147..1269884 (-) 738 WP_002229783.1 toxin-antitoxin system YwqK family antitoxin -
  CCD88_RS07195 (CCD88_07280) prmB 1270165..1271064 (-) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  CCD88_RS07200 (CCD88_07285) - 1271209..1271802 (+) 594 WP_002229776.1 hypothetical protein -
  CCD88_RS07205 (CCD88_07290) - 1271914..1272351 (+) 438 Protein_1238 HK97 family phage prohead protease -
  CCD88_RS07210 (CCD88_07295) comE 1272465..1272929 (-) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16529.75 Da        Isoelectric Point: 10.6993

>NTDB_id=232819 CCD88_RS07210 WP_010981060.1 1272465..1272929(-) (comE) [Neisseria meningitidis strain 12-330]
MLCPEKMSGMAGQYPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=232819 CCD88_RS07210 WP_010981060.1 1272465..1272929(-) (comE) [Neisseria meningitidis strain 12-330]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACAGTATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGCGCACCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment