Detailed information NTG0232816

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6P55_RS26480
• Genome accession: NZ_CP027355
• Coordinates: 4947302..4948294 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-4991
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4942302..4953294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6P55_RS26450	ispD	4942363..4943073 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C6P55_RS26455	ispF	4943073..4943552 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6P55_RS26460	truD	4943549..4944598 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6P55_RS26465	surE	4944579..4945340 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6P55_RS26470	pcm	4945334..4945960 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6P55_RS26475	nlpD	4946145..4947239 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
C6P55_RS26480	rpoS	4947302..4948294 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6P55_RS26485	ygbN	4948388..4949752 (-)	1365	WP_000104429.1	GntP family transporter	-
C6P55_RS26490	ygbM	4949841..4950617 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
C6P55_RS26495	ygbL	4950622..4951260 (-)	639	WP_001278994.1	aldolase	-
C6P55_RS26500	otnK	4951257..4952519 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=232816 C6P55_RS26480 WP_000081550.1 4947302..4948294(+) (rpoS) [Escherichia coli strain 2013C-4991]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=232816 C6P55_RS26480 WP_000081550.1 4947302..4948294(+) (rpoS) [Escherichia coli strain 2013C-4991]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715