Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6P55_RS02075 Genome accession   NZ_CP027355
Coordinates   409504..410928 (-) Length   474 a.a.
NCBI ID   WP_040090339.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C-4991     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 404504..415928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6P55_RS02045 yeeZ 404559..405383 (+) 825 WP_033803471.1 SDR family oxidoreductase -
  C6P55_RS02050 yeeY 405429..406358 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6P55_RS02055 yoeI 406573..406635 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6P55_RS02060 plaP 406625..407983 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6P55_RS02065 tsuA 408162..409220 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  C6P55_RS02070 tsuB 409234..409461 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6P55_RS02075 sbcB 409504..410928 (-) 1425 WP_040090339.1 exodeoxyribonuclease I Machinery gene
  C6P55_RS02080 - 411110..412288 (+) 1179 WP_106912623.1 site-specific integrase -
  C6P55_RS02085 - 412269..412460 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  C6P55_RS02090 - 412540..412884 (-) 345 WP_097310592.1 hypothetical protein -
  C6P55_RS02095 - 412911..413078 (-) 168 WP_106912624.1 hypothetical protein -
  C6P55_RS02100 - 413136..413936 (-) 801 WP_033803018.1 hypothetical protein -
  C6P55_RS32050 - 414094..414582 (-) 489 WP_265327022.1 DUF551 domain-containing protein -
  C6P55_RS31505 - 414880..415014 (-) 135 Protein_396 hypothetical protein -
  C6P55_RS02115 - 415011..415220 (-) 210 WP_000951712.1 hypothetical protein -
  C6P55_RS02120 - 415222..415875 (-) 654 WP_349642553.1 ead/Ea22-like family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54382.62 Da        Isoelectric Point: 5.3476

>NTDB_id=232744 C6P55_RS02075 WP_040090339.1 409504..410928(-) (sbcB) [Escherichia coli strain 2013C-4991]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=232744 C6P55_RS02075 WP_040090339.1 409504..410928(-) (sbcB) [Escherichia coli strain 2013C-4991]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586

Multiple sequence alignment